In vivo binding by Arabidopsis SPLICING FACTOR 1 shifts 3' splice site choice, regulating circadian rhythms and immunity in plants
Authors: Agrofoglio, Y. C., Iglesias, M. J., de Leone, M. J., Hernando, C. E., Lewinski, M., Torres, S. B., Contino, G., Yanovsky, M. J., Staiger, D., Mateos, J. L.
The study characterizes the plant spliceosomal protein AtSF1 in Arabidopsis thaliana, using iCLIP and RNA‑seq to map its in vivo branch point binding sites and demonstrate that loss of AtSF1 causes widespread 3' splice‑site mis‑selection. Structural comparison reveals a plant‑specific domain architecture, and the identified AtSF1 targets are enriched for circadian and defense genes, linking splicing regulation to timing and immunity.
The study evaluated how stomatal anatomy and physiological efficiency influence wheat heat tolerance across multi‑environment field trials with 200 genotypes, using early versus delayed sowing to impose temperature stress. Findings revealed a decoupling between anatomical capacity (gsmax) and actual conductance (gs, gse) under heat, plastic shifts toward smaller, denser stomata, and identified 125 QTL linked to stomatal traits, suggesting targets for breeding climate‑resilient wheat.
Using ten Phaeodactylum tricornutum mutant strains with graded constitutive Lhcx1 expression, the study links NPQ induction under high light to physiological outcomes (oxidized QA, increased cyclic electron flow) and extensive transcriptomic reprogramming, affecting nearly half the genome. The approach demonstrates that higher NPQ mitigates PSII damage, boosts ATP production for repair, and drives distinct gene regulatory networks, providing a model framework for dissecting photosynthetic and gene expression integration.
The study establishes a tractable system using the large bloom-forming diatom Coscinodiscus granii and its natural oomycete parasite Lagenisma coscinodisci, enabling manual isolation of single host cells and stable co-cultures. High‑quality transcriptomes for both partners were assembled, revealing diverse oomycete effectors and a host transcriptional response involving proteases and exosome pathways, while also profiling the co‑occurring heterotrophic flagellate Pteridomonas sp. This tripartite platform provides a unique marine model for dissecting molecular mechanisms of oomycete‑diatom interactions.
A comprehensive multi‑environment trial of 437 maize testcross hybrids derived from 38 MLN‑tolerant lines and 29 testers identified additive genetic effects as the primary driver of grain yield, disease resistance, and drought tolerance. Strong general combining ability and specific combining ability patterns were uncovered, with top hybrids delivering up to 5.75 t ha⁻¹ under MLN pressure while maintaining high performance under optimum and drought conditions. The study provides a framework for selecting elite parents and exploiting both additive and non‑additive effects to develop resilient maize hybrids for sub‑Saharan Africa.
The study evaluated a transgenic soybean line (VPZ-34A) expressing Arabidopsis VDE, PsbS, and ZEP for combined improvements in light‑use efficiency and carbon assimilation under ambient and elevated CO2 in a FACE experiment. While VPZ‑34A showed enhanced maximum quantum efficiency of PSII under fluctuating light, it did not increase carbon assimilation efficiency or yield, and transcriptome analysis revealed limited gene expression changes. The results suggest that VPZ‑mediated photosynthetic gains are insufficient to boost productivity under elevated CO2.
The study performed a meta‑transcriptomic analysis of over twenty drought versus control experiments in Vitis vinifera and two hybrid rootstocks, identifying a core set of 4,617 drought‑responsive genes. Using transcription factor binding motif enrichment and random‑forest machine learning, gene regulatory networks were built, revealing key regulators such as ABF2, MYB30A, and a novel HMG‑box protein. These regulators and network hierarchies provide candidate targets for breeding and biotechnological improvement of grapevine drought tolerance.
Characterization of a dominant SmNac-like gene as a candidate for photosensitivity in the fruit peel of eggplant
Authors: Gomis-Cebolla, J., Manrique, S., Arrones, A., Toledo-Tolgar, M. D., Luna, J., Baraja-Fonseca, V., Sanchez-Pascual, J., Gimeno-Paez, E., Plazas, M., Gramazio, P., Vilanova, S., Prohens, J.
The study identified that fruit photosensitivity in eggplant is governed by a single dominant gene, with QTLs clustering at the distal end of chromosome 10 (84.1-87.9 Mb). Bulked segregant analysis sequencing and RNA‑seq highlighted the SmNAC1‑like transcription factor as a likely regulator of anthocyanin accumulation, though no coding sequence mutations were detected, suggesting regulatory control at another level.
The study reveals that the Arabidopsis O-GlcNAc transferase SEC is essential for timely ABA‑induced stomatal closure and drought tolerance, with sec-5 mutants showing delayed closure and increased water loss, while SEC overexpression enhances responsiveness. SEC influences guard‑cell microtubule remodeling, as loss of SEC impairs microtubule reorganization and SEC directly interacts with tubulin α‑4, suggesting tubulin as a target of O‑GlcNAcylation.
The study investigates the role of the chromatin regulator MpSWI3, a core subunit of the SWI/SNF complex, in the liverwort Marchantia polymorpha. A promoter mutation disrupts male gametangiophore development and spermiogenesis, causing enhanced vegetative propagation, and transcriptomic analysis reveals that MpSWI3 regulates genes controlling reproductive initiation, sperm function, and asexual reproduction, highlighting its ancient epigenetic role in balancing vegetative and reproductive phases.