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AI-summarized plant biology research papers from bioRxiv

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Latest 39 Papers

Divergent Strategies of Mycorrhiza-Mediated Drought Adaptation in Poplar

Authors: Shi, H., Lu, Z., Polle, A.

Date: 2025-10-02 · Version: 1
DOI: 10.1101/2025.10.01.679871

Category: Plant Biology

Model Organism: Populus spp.

AI Summary

The study compared physiological and transcriptomic responses of poplar trees colonized by the ectomycorrhizal fungi Paxillus involutus or Cenococcum geophilum under normal, drought, and recovery conditions. Cenococcum-colonized plants showed constitutive up‑regulation of heat‑shock proteins, galactinol synthase, and aquaporins and maintained water status and photosynthesis during severe drought, whereas Paxillus colonization promoted growth and nitrogen‑use efficiency and enabled rapid recovery through drought‑induced leaf shedding. These contrasting strategies illustrate species‑specific positions on the growth‑defense trade‑off in ectomycorrhizal symbiosis.

ectomycorrhizal fungi drought tolerance Populus Paxillus involutus Cenococcum geophilum

Cellular energy sensor SnRK1 suppresses salicylic acid-dependent and -independent defenses and bacterial resistance in Arabidopsis

Authors: Jie, L., Sanagi, M., Yasuda, S., Yamada, K., Ejima, S., Sugisaki, A., Takagi, J., Nomoto, M., Xin, X., Tada, Y., Saijo, Y., Sato, T.

Date: 2025-10-01 · Version: 1
DOI: 10.1101/2025.10.01.679707

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that the energy sensor SnRK1 modulates Arabidopsis defense by repressing SA‑dependent gene expression and bacterial resistance, with its activity enhanced under high humidity. SnRK1 interacts with TGA transcription factors to attenuate PR1 expression, linking cellular energy status to immune regulation.

SnRK1 salicylic acid signaling plant immunity energy status high humidity

A Key Role for S-Nitrosylation in Immune Regulation and Development in the Liverwort Marchantia polymorpha

Authors: Goodrich, J.

Date: 2025-09-30 · Version: 1
DOI: 10.1101/2025.09.29.679193

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study characterizes the single-copy S-nitrosoglutathione reductase 1 (MpGSNOR1) in the liverwort Marchantia polymorpha, showing that loss-of-function mutants generated via CRISPR/Cas9 exhibit marked morphological defects and compromised SNO homeostasis and immune responses. These findings indicate that GSNOR-mediated regulation of S‑nitrosylation is an ancient mechanism linking development and immunity in early land plants.

Nitric oxide S-nitrosylation GSNOR Marchantia polymorpha plant immunity

Improving rice drought tolerance through host-mediated microbiome selection

Authors: Styer, A., Pettinga, D., Caddell, D. F., Coleman-Derr, D.

Date: 2025-09-18 · Version: 2
DOI: 10.1101/2024.02.03.578672

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study used host-mediated artificial selection to iteratively enrich rice-associated microbiomes that improve growth and drought tolerance, starting from diverse soil microbial communities. Over multiple generations, selected microbiomes converged, and amplicon sequencing along with metagenome-assembled genomes identified specific bacterial taxa and functional pathways (e.g., glycerol-3-phosphate and iron transport) linked to enhanced drought performance. The results demonstrate the effectiveness of plant phenotype-driven microbiome engineering for crop improvement.

host-mediated selection drought tolerance microbiome engineering amplicon sequencing metagenome-assembled genomes

Comparative gene regulatory network mapping of Brassicaceae members with differential drought tolerance

Authors: Pandiarajan, R., Lin, C.-W., Sauer, M., Rothballer, S. T., Marin-de la Rosa, N., Schwehn, P., Papadopoulou, E., Mairhormann, B., Falter-Braun, P.

Date: 2025-08-25 · Version: 1
DOI: 10.1101/2025.08.24.668636

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study mapped drought‑responsive gene regulatory networks in Arabidopsis thaliana, its tolerant relative Arabidopsis lyrata, and Eutrema salsugineum using yeast one‑hybrid screens of orthologous promoters, revealing higher network connectivity and specific TF‑promoter interactions in the tolerant species. Notable findings include an Esa‑specific expansion of bZIP interactions, differential ABA‑signalling edges, and the identification of ASIL2 as a novel stress‑responsive factor, providing a comparative framework for improving crop drought tolerance.

drought tolerance gene regulatory network Brassicaceae transcription factor interactions ABA signaling

NUDIX Hydrolases Target Specific Inositol Pyrophosphates and Regulate Phosphate Homeostasis and Bacterial Pathogen Susceptibility in Arabidopsis

Authors: Schneider, R., Lami, K., Prucker, I., Stolze, S. C., Strauss, A., Schmidt, J. M., Bartsch, S. M., Langenbach, K., Lange, E., Ritter, K., Furkert, D., Faiss, N., Kumar, S., Hasan, M. S., Makris, A., Krusenbaum, L., Wege, S., Belay, Y. Z., Kriescher, S., The, J., Harings, M., Grundler, F., Ried-Lasi, M. K., Schoof, H., Gaugler, P., Kamleitner, M., Fiedler, D., Nakagami, H., Giehl, R. F., Lahaye, T., Bhattacharjee, S., Jessen, H. J., Gaugler, V., Schaaf, G.

Date: 2025-08-12 · Version: 2
DOI: 10.1101/2024.10.18.619122

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identified two subclades of Arabidopsis NUDIX hydrolases that selectively hydrolyze distinct inositol pyrophosphate isomers, with subclade I targeting 4-InsP7 and subclade II targeting 3-InsP7 in a Mg2+-dependent manner. Loss-of-function mutants of subclade II NUDTs displayed disrupted phosphate and iron homeostasis, elevated 1/3-InsP7 levels, and increased resistance to Pseudomonas syringae, revealing roles in nutrient signaling and plant immunity, while cross-kingdom analyses showed conserved PP-InsP‑metabolizing activities.

Inositol pyrophosphates NUDIX hydrolases phosphate homeostasis iron homeostasis plant immunity

Harnessing drought tolerance in a reference set of Andean amaranths

Authors: Curti, R. N., Rodriguez, J., Ortega-Baes, P., Bramardi, S. J., Velasquez, B., Andrade, A. J.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668942

Category: Plant Biology

Model Organism: Amaranthus spp.

AI Summary

The study evaluated drought tolerance and yield stability of eleven Andean amaranth genotypes (A. caudatus and A. mantegazzianus) across four agroecological zones in Northwest Argentina under irrigated and drought‑stressed conditions. Using linear mixed models and AMMI analysis, significant genotype and genotype‑by‑environment effects were detected, identifying several breeding lines with high yield and stability as well as a highly stable but low‑yielding landrace. The results highlight both broad and specific adaptation among amaranth genotypes for drought‑prone environments.

drought tolerance genotype × environment interaction Amaranthus yield stability Andean amaranth

Cell-type specific gating of gene regulatory modules as a hallmark of early immune responses in Arabidopsis leaves

Authors: Wang, S., Bezrukov, I., Wu, P.-J., Gauss, H., Timmermans, M., Weigel, D.

Date: 2025-08-01 · Version: 1
DOI: 10.1101/2025.08.01.668105

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study used single‑cell transcriptomics to compare Arabidopsis thaliana leaf cell responses during pattern‑triggered and effector‑triggered immunity, revealing that core defense modules are broadly shared but differ in timing, intensity, and cell‑type specific receptor dynamics. Distinct mesophyll subpopulations showed divergent resilience patterns, and gene regulatory network analysis identified WRKY‑regulated and salicylic‑acid biosynthesis modules, with the cue1-6 mutant confirming robustness of core immune responses while exposing cryptic sucrose‑responsive pathways.

single-cell RNA sequencing Arabidopsis thaliana plant immunity PTI and ETI WRKY transcription factors

The wheat VIH2-3B, a functional PPIP5K controls the localization of fasciclin-like arabinogalactan protein

Authors: Shukla, A., Gopal, R., Ghosh, R., Chaudhuri, A., Agrwal, K., Tanwar, R., Jessen, H., Laha, D., Pandey, A. K.

Date: 2025-07-22 · Version: 2
DOI: 10.1101/2024.09.24.614694

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study used a yeast two-hybrid screen to identify 52 wheat proteins that interact with the inositol pyrophosphate kinase TaVIH2-3B, highlighting the fasciclin‑like arabinogalactan protein TaFLA7 as a key partner involved in cell‑wall functions. Pulldown assays and reporter fusion analyses confirmed the interaction and plasma‑membrane localization of TaFLA7, which is modulated by TaVIH2‑3B activity and shows drought‑responsive and grain‑development expression in wheat.

Inositol pyrophosphate kinase TaVIH2-3B TaFLA7 cell wall remodeling drought tolerance

A conserved small RNA-generating gene cluster undergoes sequence diversification and contributes to plant immunity

Authors: Feng, L., Hou, Y., Toghani, A., Wang, Z., Tang, B., Atkinson, N., Li, H., Qiao, Y., Wang, Y., Hua, J., Zhai, J., Ma, W.

Date: 2025-07-21 · Version: 1
DOI: 10.1101/2025.07.20.665670

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that a conserved clade of pentatricopeptide repeat (PPR) genes in Arabidopsis thaliana generates secondary siRNAs that contribute to plant immunity, with these PPR loci undergoing extensive duplication and diversification to create a varied siRNA pool for pathogen defense. This PPR‑siRNA system is proposed as a novel family of defense genes with potential for engineering broad‑spectrum disease resistance.

secondary siRNA pentatricopete repeat proteins plant immunity gene duplication co‑evolutionary arms race
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