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AI-summarized plant biology research papers from bioRxiv

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Latest 22 Papers

A copper-dependent, redox-based hydrogen peroxide perception in plants

Authors: Ishihama, N., Fukuda, Y., Shirano, Y., Takizawa, K., Hiroyama, R., Fujimoto, K. J., Ito, H., Nishimura, M., Yanai, T., Inoue, T., Shirasu, K., Laohavisit, A.

Date: 2025-07-25 · Version: 1
DOI: 10.1101/2025.07.22.666036

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study resolves the ectodomain structure of the plant-specific LRR‑RLK CARD1 (HPCA1) and reveals a surface‑exposed copper ion coordinated by histidines that is essential for hydrogen peroxide signaling. Combined structural, genetic, and biochemical analyses show that previously identified cysteine residues are not required for signal perception, establishing CARD1 as the first copper‑dependent redox receptor.

quinone signaling reactive oxygen species LRR‑RLK copper‑dependent receptor hydrogen peroxide signaling

Papaver S-determinants trigger an integrated network of mitochondrially derived ROS and disruption of energy metabolism in incompatible pollen tubes

Authors: Wang, L., Hsiao, A.-S., Carli, J., Raza, A., Lin, Z., Arnaud, D., Davies, J., Franklin-Tong, V. E., Smirnoff, N., Bosch, M.

Date: 2025-06-27 · Version: 1
DOI: 10.1101/2025.06.26.661469

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reconstitutes Papaver rhoeas self‑incompatibility (SI) in Arabidopsis thaliana by expressing the pollen S‑determinant PrpS, revealing that SI triggers a rapid Ca2+‑dependent signaling cascade that leads to mitochondrial H2O2 production, metabolic collapse, and programmed cell death. Using a genetically encoded H2O2 sensor and metabolic assays, the authors show that early mitochondrial disruption, driven by altered Ca2+, cytosolic pH, and distinct ROS sources, is central to the SI response.

self-incompatibility reactive oxygen species mitochondrial disruption Ca2+ signaling Arabidopsis thaliana

Non-Thermal Plasma Activated Water is an Effective Nitrogen Fertilizer Alternative for Arabidopsis thaliana

Authors: Kizer, J. J., Robinson, C. D., Lucas, T., Shannon, S., Hernandez, R., Stapelmann, K., Rojas-Pierce, M.

Date: 2025-06-17 · Version: 1
DOI: 10.1101/2025.06.12.659237

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study compared two plasma‑activated water (PAW) solutions with different H₂O₂ levels, produced by a radio‑frequency glow discharge, on Arabidopsis thaliana growth and stress responses. PAW lacking detectable H₂O₂ promoted seedling growth and induced nitrogen‑assimilation genes, while H₂O₂‑containing PAW did not affect growth but enhanced root performance under heat stress; mature plants fertilized with H₂O₂‑free PAW performed comparably to nitrate controls. These results indicate PAW can replace NO₃⁻ fertilizers provided H₂O₂ levels are carefully managed.

plasma activated water hydrogen peroxide reactive oxygen species nitrogen uptake heat stress

Drought stress modulates the molecular response of Arabidopsis plants to root-knot nematode infection

Authors: Refaiy, A., Lilley, C. J., Atkinson, N. J., Urwin, P. E.

Date: 2025-06-09 · Version: 1
DOI: 10.1101/2025.06.05.658137

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

RNA‑Seq was used to compare Arabidopsis thaliana transcriptomes under drought, Meloidogyne incognita infection, and their combination, revealing a distinct set of genes uniquely regulated by the joint stress. Notably, AZI1, SAUR71, and DRN1 showed stress‑specific expression patterns, suggesting key roles in coordinating responses to simultaneous drought and nematode attack.

combined biotic and abiotic stress drought stress root‑knot nematode (Meloidogyne incognita) RNA‑Seq transcriptomics Arabidopsis thaliana

MLO-mediated Ca2+ influx regulates root hair tip growth in Arabidopsis

Authors: Ogawa, S. T., Zhang, W., Staiger, C. J., Kessler, S. A.

Date: 2025-04-10 · Version: 1
DOI: 10.1101/2025.04.08.647801

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that constitutively active MLO (faNTA) can rescue the fer-4 root‑hair bursting and polarity defects, restoring tip‑focused cytosolic Ca2+ oscillations and ROS accumulation, highlighting a FERONIA‑MLO signaling module that governs Ca2+ influx and ROS production during root‑hair tip growth. Genetic analysis of mlo15-4 further confirms MLO15 as a key regulator of these Ca2+ and ROS dynamics. The findings suggest MLO proteins act downstream of FER to coordinate calcium and ROS signals essential for root‑hair integrity.

root hair tip growth calcium signaling reactive oxygen species FERONIA receptor kinase MLO proteins

ROS regulation of stigma papillae growth and maturation in Arabidopsis thaliana

Authors: Sankaranarayanan, S., Venkatesan, S. D., Davis, T. C., Kessler, S. A.

Date: 2025-04-10 · Version: 1
DOI: 10.1101/2025.04.08.647846

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that reactive oxygen species (ROS) have distinct temporal roles in Arabidopsis thaliana stigma papillae development, with superoxide promoting early growth and hydrogen peroxide marking mature, pollen‑receptive papillae. Pharmacological reduction of superoxide or transgenic over‑expression of superoxide dismutase under an early stigma promoter impairs papillae growth, highlighting ROS homeostasis as essential for proper papillae differentiation and successful pollination.

stigma papillae reactive oxygen species Arabidopsis thaliana superoxide pollen reception

HISTONE DEACETYLASE COMPLEX 1 modulates sepal length through the ethylene-ROS module

Authors: Xiang, D., Qiu, D., Zhang, R., He, X., Xu, S., Zhou, M., Hong, L.

Date: 2025-03-31 · Version: 1
DOI: 10.1101/2025.03.27.645679

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies HISTONE DEACETYLASE COMPLEX 1 (HDC1) as a positive regulator of sepal size during maturation in Arabidopsis thaliana, showing that hdc1 mutants exhibit prolonged elongation due to delayed maturation. Integrated transcriptomic and proteomic analyses, together with genetic and chemical experiments, reveal that HDC1 promotes ethylene production, which in turn triggers ROS accumulation to terminate sepal growth. These findings elucidate a coordinated ethylene‑ROS signaling mechanism controlling organ size during plant development.

HISTONE DEACETYLASE COMPLEX 1 sepal size regulation ethylene signaling reactive oxygen species Arabidopsis thaliana

Antioxidant properties of dihydroxy B-ring flavonoids modulate circadian amplitude in Arabidopsis

Authors: Littleton, E. S., Hildreth, S. B., Kojima, S., Winkel, B. S. J.

Date: 2025-03-13 · Version: 1
DOI: 10.1101/2025.03.09.641856

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that dihydroxy B‑ring flavonoids modulate the amplitude of the core circadian clock gene reporter TOC1:LUC in Arabidopsis by affecting cellular H2O2 levels, rather than auxin transport. Reducing reactive oxygen species restored normal TOC1:LUC amplitude in flavonoid‑deficient seedlings, and altered chloroplast Ca2+ levels suggest a retrograde signaling component.

flavonoids circadian clock reactive oxygen species TOC1:LUC reporter chloroplast calcium signaling

MYB59 is linked to natural variation of water use associated with warmer temperatures in Arabidopsis thaliana

Authors: Ferguson, J. N., Brendel, O., Bechtold, U.

Date: 2025-02-28 · Version: 1
DOI: 10.1101/2025.02.27.640580

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study surveyed vegetative water use and life‑history traits across Arabidopsis thaliana ecotypes in both controlled and outdoor environments to assess how climatic history shapes water‑use strategies. Trait‑climate correlations and genome‑wide association analyses uncovered that ecotypes from warmer regions exhibit higher water use, and identified MYB59 as a key gene whose temperature‑linked alleles affect water consumption, a finding validated using myb59 mutants. These results indicate that temperature‑driven adaptive differentiation partly explains intraspecific water‑use variation.

water-use variation Arabidopsis thaliana climate adaptation GWAS MYB59

Stress drives plasticity in leaf maturation transcriptional dynamics

Authors: Swift, J., Wu, X., Xu, J., Jain, T., Illouz-Eliaz, N., Nery, J. R., Chory, J., Ecker, J. R.

Date: 2025-02-25 · Version: 1
DOI: 10.1101/2025.02.24.639183

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study constructs a ~1‑million‑cell single‑nuclei transcriptome atlas of Arabidopsis leaves to reveal that drought stress accelerates transcriptional programs associated with maturation and aging, thereby limiting leaf growth in proportion to stress intensity. Targeted upregulation of FERRIC REDUCTION OXIDASE 6 in mesophyll cells partially rescues leaf growth under drought, demonstrating the functional relevance of these transcriptional changes.

leaf development drought stress single-nucleus transcriptomics Arabidopsis thaliana cell-type specific gene upregulation
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