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AI-summarized plant biology research papers from bioRxiv

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Latest 18 Papers

Drought stress modulates the molecular response of Arabidopsis plants to root-knot nematode infection

Authors: Refaiy, A., Lilley, C. J., Atkinson, N. J., Urwin, P. E.

Date: 2025-06-09 · Version: 1
DOI: 10.1101/2025.06.05.658137

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

RNA‑Seq was used to compare Arabidopsis thaliana transcriptomes under drought, Meloidogyne incognita infection, and their combination, revealing a distinct set of genes uniquely regulated by the joint stress. Notably, AZI1, SAUR71, and DRN1 showed stress‑specific expression patterns, suggesting key roles in coordinating responses to simultaneous drought and nematode attack.

combined biotic and abiotic stress drought stress root‑knot nematode (Meloidogyne incognita) RNA‑Seq transcriptomics Arabidopsis thaliana

MLO-mediated Ca2+ influx regulates root hair tip growth in Arabidopsis

Authors: Ogawa, S. T., Zhang, W., Staiger, C. J., Kessler, S. A.

Date: 2025-04-10 · Version: 1
DOI: 10.1101/2025.04.08.647801

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that constitutively active MLO (faNTA) can rescue the fer-4 root‑hair bursting and polarity defects, restoring tip‑focused cytosolic Ca2+ oscillations and ROS accumulation, highlighting a FERONIA‑MLO signaling module that governs Ca2+ influx and ROS production during root‑hair tip growth. Genetic analysis of mlo15-4 further confirms MLO15 as a key regulator of these Ca2+ and ROS dynamics. The findings suggest MLO proteins act downstream of FER to coordinate calcium and ROS signals essential for root‑hair integrity.

root hair tip growth calcium signaling reactive oxygen species FERONIA receptor kinase MLO proteins

ROS regulation of stigma papillae growth and maturation in Arabidopsis thaliana

Authors: Sankaranarayanan, S., Venkatesan, S. D., Davis, T. C., Kessler, S. A.

Date: 2025-04-10 · Version: 1
DOI: 10.1101/2025.04.08.647846

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that reactive oxygen species (ROS) have distinct temporal roles in Arabidopsis thaliana stigma papillae development, with superoxide promoting early growth and hydrogen peroxide marking mature, pollen‑receptive papillae. Pharmacological reduction of superoxide or transgenic over‑expression of superoxide dismutase under an early stigma promoter impairs papillae growth, highlighting ROS homeostasis as essential for proper papillae differentiation and successful pollination.

stigma papillae reactive oxygen species Arabidopsis thaliana superoxide pollen reception

HISTONE DEACETYLASE COMPLEX 1 modulates sepal length through the ethylene-ROS module

Authors: Xiang, D., Qiu, D., Zhang, R., He, X., Xu, S., Zhou, M., Hong, L.

Date: 2025-03-31 · Version: 1
DOI: 10.1101/2025.03.27.645679

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies HISTONE DEACETYLASE COMPLEX 1 (HDC1) as a positive regulator of sepal size during maturation in Arabidopsis thaliana, showing that hdc1 mutants exhibit prolonged elongation due to delayed maturation. Integrated transcriptomic and proteomic analyses, together with genetic and chemical experiments, reveal that HDC1 promotes ethylene production, which in turn triggers ROS accumulation to terminate sepal growth. These findings elucidate a coordinated ethylene‑ROS signaling mechanism controlling organ size during plant development.

HISTONE DEACETYLASE COMPLEX 1 sepal size regulation ethylene signaling reactive oxygen species Arabidopsis thaliana

Antioxidant properties of dihydroxy B-ring flavonoids modulate circadian amplitude in Arabidopsis

Authors: Littleton, E. S., Hildreth, S. B., Kojima, S., Winkel, B. S. J.

Date: 2025-03-13 · Version: 1
DOI: 10.1101/2025.03.09.641856

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that dihydroxy B‑ring flavonoids modulate the amplitude of the core circadian clock gene reporter TOC1:LUC in Arabidopsis by affecting cellular H2O2 levels, rather than auxin transport. Reducing reactive oxygen species restored normal TOC1:LUC amplitude in flavonoid‑deficient seedlings, and altered chloroplast Ca2+ levels suggest a retrograde signaling component.

flavonoids circadian clock reactive oxygen species TOC1:LUC reporter chloroplast calcium signaling

Stress drives plasticity in leaf maturation transcriptional dynamics

Authors: Swift, J., Wu, X., Xu, J., Jain, T., Illouz-Eliaz, N., Nery, J. R., Chory, J., Ecker, J. R.

Date: 2025-02-25 · Version: 1
DOI: 10.1101/2025.02.24.639183

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study constructs a ~1‑million‑cell single‑nuclei transcriptome atlas of Arabidopsis leaves to reveal that drought stress accelerates transcriptional programs associated with maturation and aging, thereby limiting leaf growth in proportion to stress intensity. Targeted upregulation of FERRIC REDUCTION OXIDASE 6 in mesophyll cells partially rescues leaf growth under drought, demonstrating the functional relevance of these transcriptional changes.

leaf development drought stress single-nucleus transcriptomics Arabidopsis thaliana cell-type specific gene upregulation

Protein and genetic interactions between RACK1A and FSD1 modulate plant development and stress granule-dependent response to salt in Arabidopsis.

Authors: Melicher, P., Dvorak, P., Tsinyk, M., Rehak, J., Samajova, O., Hlavackova, K., Ovecka, M., Samaj, J., Takac, T.

Date: 2025-02-25 · Version: 1
DOI: 10.1101/2025.02.25.640159

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the scaffolding protein RACK1A as a cytoplasmic interaction partner of the antioxidant enzyme FSD1, revealing that RACK1A recruits FSD1 to cycloheximide-sensitive condensates that colocalize with stress granules during salt stress. Functional analyses show that this RACK1A‑FSD1 module modulates ROS levels, influences root hair tip growth, and determines salt‑stress resilience in Arabidopsis.

reactive oxygen species salt stress RACK1A-FSD1 interaction stress granules Arabidopsis

Hydrogen Sulfide modulates Flagellin-Induced Stomatal Immunity

Authors: Scuffi, D., Pantaleno, R., Schiel, P., Peer Niemeier, J.-O., Costa, A., Schwarzländer, M., Laxalt, A., Garcia Mata, C.

Date: 2025-02-19 · Version: 1
DOI: 10.1101/2025.02.14.638267

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that hydrogen sulfide (H₂S) and the cysteine desulfhydrase DES1 are essential for stomatal immunity, mediating flg22‑ and bacterial‑induced stomatal closure and influencing reactive oxygen species (ROS) dynamics. Loss‑of‑function des1 mutants show altered susceptibility to Pseudomonas syringae and reduced apoplastic and cytosolic H₂O₂ accumulation, while H₂S can induce ROS production independently of RBOHD.

hydrogen sulfide DES1 stomatal immunity flg22 reactive oxygen species
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