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AI-summarized plant biology research papers from bioRxiv

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Proline transporters balance the salicylic acid-mediated trade-off between regeneration and immunity in plants

Authors: Yang, L., Xu, D., Belew, Z. M., Cassia Ferreira Dias, N., Wang, L., Zhang, A., Chen, Y.-F. S., Newton, C. J., Kong, F., Zheng, Y., Yao, Y., Brewer, M. T., Teixeira, P. J. P. L., Nour-Eldin, H. H., Xu, D.

Date: 2025-11-20 · Version: 1
DOI: 10.1101/2025.11.20.689487

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study identifies wound‑induced proline transporters ProT2 and ProT3 as central regulators that link salicylic acid signaling to the suppression of de novo root regeneration (DNRR) via modulation of reactive oxygen species dynamics. Genetic loss of these transporters or pharmacological inhibition of proline transport alleviates SA‑mediated regeneration inhibition across several plant species without compromising disease resistance.

salicylic acid proline transporters de novo root regeneration reactive oxygen species immunity‑regeneration trade‑off

The secreted redox sensor roGFP2-Orp1 reveals oxidative dynamics in the plant apoplast

Authors: Ingelfinger, J., Zander, L., Seitz, P. L., Trentmann, O., Tiedemann, S., Sprunck, S., Dresselhaus, T., Meyer, A. J., Müller-Schüssele, S. J.

Date: 2025-07-09 · Version: 2
DOI: 10.1101/2025.01.10.632316

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study evaluated the genetically encoded redox biosensor roGFP2-Orp1 for monitoring extracellular redox dynamics in diverse land plants, revealing that re‑oxidation rates in the apoplast differ between Physcomitrium patens and Arabidopsis thaliana and are accelerated by immune activation. Comparisons across tip‑growing cells showed no intracellular redox gradient but a partially reduced extracellular sensor in Nicotiana tabacum pollen tubes, indicating species‑ and cell‑type‑specific oxidative processes.

reactive oxygen species apoplastic redox dynamics roGFP2-Orp1 biosensor immune signaling plant model species

Large-scale single-cell profiling of stem cells uncovers redundant regulators of shoot development and yield trait variation

Authors: Xu, X., Passalacqua, M., Rice, B., Demesa-Arevalo, E., Kojima, M., Takebayashi, Y., Harris, B., Sakakibara, H., Gallavotti, A., Gillis, J., Jackson, D.

Date: 2025-04-17 · Version: 2
DOI: 10.1101/2024.03.04.583414

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study finely dissected shoot stem cell–enriched tissues from maize and Arabidopsis thaliana and optimized single‑cell RNA‑seq protocols to reliably capture CLAVATA3 and WUSCHEL‑expressing cells. Cross‑species comparison and functional validation, including spatial transcriptomics and mutant analyses, revealed conserved ribosome‑associated RNA‑binding proteins and sugar‑kinase families as key regulators linked to shoot development and yield traits.

single-cell RNA sequencing shoot stem cells Arabidopsis thaliana Zea mays stem cell regulators

Metabolic network divergence: polyamine and ethylene dynamics in Arabidopsis thaliana and Solanum lycopersicum

Authors: Cermanova, K., Bublava, P., Darbandsari, M., Fellner, M., Novak, O., Karady, M.

Date: 2025-01-27 · Version: 1
DOI: 10.1101/2025.01.24.634693

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study developed a validated LC‑MS/MS method to simultaneously quantify fourteen polyamines, amino acids, and ethylene precursors in Arabidopsis thaliana and Solanum lycopersicum, and used it to compare their metabolic responses to drought, salinity, and inhibitor treatments. Distinct species‑specific metabolic adjustments were observed, with Arabidopsis showing greater fluctuations and drought generally increasing metabolite levels, while spermine exhibited stress‑specific patterns.

polyamines ethylene precursors metabolomics Arabidopsis thaliana Solanum lycopersicum