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AI-summarized plant biology research papers from bioRxiv

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Latest 40 Papers

Unravelling the intraspecific variation in drought responses in seedlings of European black pine (Pinus nigra J.F. Arnold)

Authors: Ahmad, M., Hammerbacher, A., Priemer, C., Ciceu, A., Karolak, M., Mader, S., Olsson, S., Schinnerl, J., Seitner, S., Schoendorfer, S., Helfenbein, P., Jakub, J., Breuer, M., Espinosa, A., Caballero, T., Ganthaler, A., Mayr, S., Grosskinsky, D. K., Wienkoop, S., Schueler, S., Trujillo-Moya, C., van Loo, M.

Date: 2025-10-21 · Version: 1
DOI: 10.1101/2025.10.20.683360

Category: Plant Biology

Model Organism: Pinus nigra

AI Summary

The study examined drought tolerance across nine provenances of the conifer Pinus nigra using high‑throughput phenotyping combined with metabolomic and transcriptomic analyses under controlled soil‑drying conditions. Drought tolerance, measured by the decline in Fv/Fm, varied among provenances but was not linked to a climatic gradient and was independent of growth, with tolerant provenances showing distinct flavonoid and diterpene profiles and provenance‑specific gene expression patterns. Integrating phenotypic and molecular data revealed metabolic signatures underlying drought adaptation in this non‑model conifer.

drought tolerance Pinus nigra metabolomics transcriptomics phenotyping

Plasmodesmal closure elicits stress responses

Authors: Tee, E., Breakspear, A., Papp, D., Thomas, H. R., Walker, C., Bellandi, A., Faulkner, C.

Date: 2025-10-17 · Version: 3
DOI: 10.1101/2024.05.08.593115

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study created transgenic Arabidopsis lines enabling inducible plasmodesmal closure via an overactive CALLOSE SYNTHASE3 allele (icals3m) and the C‑terminal domain of PDLP1, independent of pathogen signals. Induced closure triggered stress‑responsive gene expression, elevated salicylic acid levels, and enhanced resistance to Pseudomonas syringae, while also causing starch accumulation, reduced growth, and increased susceptibility to Botrytis cinerea, indicating that plasmodesmal closure itself can activate immune signaling.

plasmodesmata callose deposition salicylic acid immune response transgenic closure

Primary metabolism determines the outcome of salicylic acid-mediated immune induction

Authors: Zhang, Q., Xie, Y., Karapetyan, S., Wang, J., Mwimba, M., Yoo, H., Dong, X.

Date: 2025-10-14 · Version: 1
DOI: 10.1101/2025.10.13.682132

Category: Plant Biology

Model Organism: General

AI Summary

The study identified twenty survival of SA-induced death (ssd) mutants that are defective in starch, glucose, nitrate metabolism, and circadian regulation, leading to excessive carbohydrate accumulation and susceptibility to salicylic acid (SA)-induced death in prolonged darkness. Glucose application rescues SA‑treated plants by antagonizing oxidative stress and restoring metabolic balance, as revealed by transcriptomic analyses that link SA‑induced cell death to effector‑triggered immunity pathways.

salicylic acid circadian regulation starch and glucose metabolism oxidative stress glucose rescue

Divergent Strategies of Mycorrhiza-Mediated Drought Adaptation in Poplar

Authors: Shi, H., Lu, Z., Polle, A.

Date: 2025-10-02 · Version: 1
DOI: 10.1101/2025.10.01.679871

Category: Plant Biology

Model Organism: Populus spp.

AI Summary

The study compared physiological and transcriptomic responses of poplar trees colonized by the ectomycorrhizal fungi Paxillus involutus or Cenococcum geophilum under normal, drought, and recovery conditions. Cenococcum-colonized plants showed constitutive up‑regulation of heat‑shock proteins, galactinol synthase, and aquaporins and maintained water status and photosynthesis during severe drought, whereas Paxillus colonization promoted growth and nitrogen‑use efficiency and enabled rapid recovery through drought‑induced leaf shedding. These contrasting strategies illustrate species‑specific positions on the growth‑defense trade‑off in ectomycorrhizal symbiosis.

ectomycorrhizal fungi drought tolerance Populus Paxillus involutus Cenococcum geophilum

Improving rice drought tolerance through host-mediated microbiome selection

Authors: Styer, A., Pettinga, D., Caddell, D. F., Coleman-Derr, D.

Date: 2025-09-18 · Version: 2
DOI: 10.1101/2024.02.03.578672

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study used host-mediated artificial selection to iteratively enrich rice-associated microbiomes that improve growth and drought tolerance, starting from diverse soil microbial communities. Over multiple generations, selected microbiomes converged, and amplicon sequencing along with metagenome-assembled genomes identified specific bacterial taxa and functional pathways (e.g., glycerol-3-phosphate and iron transport) linked to enhanced drought performance. The results demonstrate the effectiveness of plant phenotype-driven microbiome engineering for crop improvement.

host-mediated selection drought tolerance microbiome engineering amplicon sequencing metagenome-assembled genomes

MBD8 is required for LDL2-mediated transcriptional repression downstream of H3K9me2 in Arabidopsis

Authors: Mori, S., Osakabe, A., Juliarni,, Tanaka, Y., Hirayama, M., Inagaki, S., Kakutani, T.

Date: 2025-08-25 · Version: 1
DOI: 10.1101/2025.08.21.671526

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that the methyl‑CpG‑binding domain protein MBD8 interacts with the histone demethylase LDL2 to facilitate removal of H3K4me1 and transcriptional repression downstream of H3K9me2 in Arabidopsis. MBD8 binds GC‑poor DNA independently of cytosine methylation and stabilizes LDL2 protein levels, indicating a broader role for MBD proteins beyond methyl‑DNA recognition.

H3K9me2 LDL2 MBD8 histone demethylation Arabidopsis

Comparative gene regulatory network mapping of Brassicaceae members with differential drought tolerance

Authors: Pandiarajan, R., Lin, C.-W., Sauer, M., Rothballer, S. T., Marin-de la Rosa, N., Schwehn, P., Papadopoulou, E., Mairhormann, B., Falter-Braun, P.

Date: 2025-08-25 · Version: 1
DOI: 10.1101/2025.08.24.668636

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study mapped drought‑responsive gene regulatory networks in Arabidopsis thaliana, its tolerant relative Arabidopsis lyrata, and Eutrema salsugineum using yeast one‑hybrid screens of orthologous promoters, revealing higher network connectivity and specific TF‑promoter interactions in the tolerant species. Notable findings include an Esa‑specific expansion of bZIP interactions, differential ABA‑signalling edges, and the identification of ASIL2 as a novel stress‑responsive factor, providing a comparative framework for improving crop drought tolerance.

drought tolerance gene regulatory network Brassicaceae transcription factor interactions ABA signaling

Harnessing drought tolerance in a reference set of Andean amaranths

Authors: Curti, R. N., Rodriguez, J., Ortega-Baes, P., Bramardi, S. J., Velasquez, B., Andrade, A. J.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668942

Category: Plant Biology

Model Organism: Amaranthus spp.

AI Summary

The study evaluated drought tolerance and yield stability of eleven Andean amaranth genotypes (A. caudatus and A. mantegazzianus) across four agroecological zones in Northwest Argentina under irrigated and drought‑stressed conditions. Using linear mixed models and AMMI analysis, significant genotype and genotype‑by‑environment effects were detected, identifying several breeding lines with high yield and stability as well as a highly stable but low‑yielding landrace. The results highlight both broad and specific adaptation among amaranth genotypes for drought‑prone environments.

drought tolerance genotype × environment interaction Amaranthus yield stability Andean amaranth

The wheat VIH2-3B, a functional PPIP5K controls the localization of fasciclin-like arabinogalactan protein

Authors: Shukla, A., Gopal, R., Ghosh, R., Chaudhuri, A., Agrwal, K., Tanwar, R., Jessen, H., Laha, D., Pandey, A. K.

Date: 2025-07-22 · Version: 2
DOI: 10.1101/2024.09.24.614694

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study used a yeast two-hybrid screen to identify 52 wheat proteins that interact with the inositol pyrophosphate kinase TaVIH2-3B, highlighting the fasciclin‑like arabinogalactan protein TaFLA7 as a key partner involved in cell‑wall functions. Pulldown assays and reporter fusion analyses confirmed the interaction and plasma‑membrane localization of TaFLA7, which is modulated by TaVIH2‑3B activity and shows drought‑responsive and grain‑development expression in wheat.

Inositol pyrophosphate kinase TaVIH2-3B TaFLA7 cell wall remodeling drought tolerance

Maize mutant hybrids with improved drought tolerance and increased yield in a field experimental setting

Authors: Belen, F., Garnero Patat, P., Jaime, C., Walker, S., Dellaferrera, I., Maiztegui, J., Dunger, G., Dotto, M. C.

Date: 2025-07-11 · Version: 1
DOI: 10.1101/2025.07.10.664191

Category: Plant Biology

Model Organism: Zea mays

AI Summary

Double mutant hybrids in the miR394‑regulated genes ZmLCR1 and ZmLCR2, created in a W22/B73 maize background, display enhanced drought tolerance through increased epicuticular wax and reduced ROS production, while maintaining normal flowering and nutrition. Under field rainfed conditions the mutants achieve significantly higher yields (greater ear weight and kernel number) compared to wild‑type hybrids.

drought tolerance miR394 ZmLCR1 ZmLCR2 epicuticular wax
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