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AI-summarized plant biology research papers from bioRxiv

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Latest 56 Papers

Proline transporters balance the salicylic acid-mediated trade-off between regeneration and immunity in plants

Authors: Yang, L., Xu, D., Belew, Z. M., Cassia Ferreira Dias, N., Wang, L., Zhang, A., Chen, Y.-F. S., Newton, C. J., Kong, F., Zheng, Y., Yao, Y., Brewer, M. T., Teixeira, P. J. P. L., Nour-Eldin, H. H., Xu, D.

Date: 2025-11-20 · Version: 1
DOI: 10.1101/2025.11.20.689487

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study identifies wound‑induced proline transporters ProT2 and ProT3 as central regulators that link salicylic acid signaling to the suppression of de novo root regeneration (DNRR) via modulation of reactive oxygen species dynamics. Genetic loss of these transporters or pharmacological inhibition of proline transport alleviates SA‑mediated regeneration inhibition across several plant species without compromising disease resistance.

salicylic acid proline transporters de novo root regeneration reactive oxygen species immunity‑regeneration trade‑off

Barley (Hordeum vulgare) maintains tricarboxylic acid cycle activity without invoking the GABA shunt under salt stress

Authors: Bandehagh, A., Taylor, N. L.

Date: 2025-11-08 · Version: 1
DOI: 10.1101/2025.11.06.687118

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study investigated how barley (Hordeum vulgare) adjusts mitochondrial respiration under salinity stress using physiological, biochemical, metabolomic and proteomic approaches. Salt treatment increased respiration and activated the canonical TCA cycle, while the GABA shunt remained largely inactive, contrasting with wheat responses.

salinity stress mitochondrial respiration tricarboxylic acid cycle metabolomics proteomics

Plasmodesmal closure elicits stress responses

Authors: Tee, E., Breakspear, A., Papp, D., Thomas, H. R., Walker, C., Bellandi, A., Faulkner, C.

Date: 2025-10-17 · Version: 3
DOI: 10.1101/2024.05.08.593115

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study created transgenic Arabidopsis lines enabling inducible plasmodesmal closure via an overactive CALLOSE SYNTHASE3 allele (icals3m) and the C‑terminal domain of PDLP1, independent of pathogen signals. Induced closure triggered stress‑responsive gene expression, elevated salicylic acid levels, and enhanced resistance to Pseudomonas syringae, while also causing starch accumulation, reduced growth, and increased susceptibility to Botrytis cinerea, indicating that plasmodesmal closure itself can activate immune signaling.

plasmodesmata callose deposition salicylic acid immune response transgenic closure

Guard Cell-Enriched Phosphoproteome Reveals Phosphorylation of Endomembrane Proteins in Closed Stomata

Authors: Pullen, A.-M., Lyons, S., Mordant, A., Herring, L. E., Akpa, B., Rojas-Pierce, M.

Date: 2025-10-15 · Version: 1
DOI: 10.1101/2025.10.15.682613

Category: Plant Biology

Model Organism: General

AI Summary

The study generated deep proteome and phosphoproteome datasets from guard cell‑enriched tissue to examine how phosphorylation regulates stomatal movements. Comparative analysis revealed increased phosphorylation of endomembrane trafficking and vacuolar proteins in closed stomata, supporting a role for phospho‑regulated trafficking in stomatal dynamics.

stomatal aperture guard cells phosphorylation endomembrane trafficking proteomics

Uncovering the Molecular Regulation of Seed Development and Germination in Endangered Legume Paubrasilia echinata Through Proteomic and Polyamine Analyses

Authors: Vettorazzi, R. G., Carrari-Santos, R., Sousa, K. R., Oliveira, T. R., Grativol, C., Olimpio, G., Venancio, T. M., Pinto, V. B., Quintanilha-Peixoto, G., Silveira, V., Santa-Catarna, C.

Date: 2025-10-15 · Version: 1
DOI: 10.1101/2025.10.13.682162

Category: Plant Biology

Model Organism: Paubrasilia echinata

AI Summary

The study examined seed maturation and germination in the endangered legume Paubrasilia echinata using proteomic and polyamine analyses at 4, 6, and 8 weeks post-anthesis, identifying over 2,000 proteins and linking specific polyamines to developmental stages. Mature seeds (6 weeks) showed elevated proteasome components, translation machinery, LEA proteins, and heat shock proteins, while polyamine dynamics revealed putrescine dominance in early development and spermidine/spermine association with desiccation tolerance and germination. These findings uncover dynamic molecular shifts underlying seed development and provide insights for conservation and propagation.

seed maturation proteomics polyamine profiling stress tolerance LEA proteins

Primary metabolism determines the outcome of salicylic acid-mediated immune induction

Authors: Zhang, Q., Xie, Y., Karapetyan, S., Wang, J., Mwimba, M., Yoo, H., Dong, X.

Date: 2025-10-14 · Version: 1
DOI: 10.1101/2025.10.13.682132

Category: Plant Biology

Model Organism: General

AI Summary

The study identified twenty survival of SA-induced death (ssd) mutants that are defective in starch, glucose, nitrate metabolism, and circadian regulation, leading to excessive carbohydrate accumulation and susceptibility to salicylic acid (SA)-induced death in prolonged darkness. Glucose application rescues SA‑treated plants by antagonizing oxidative stress and restoring metabolic balance, as revealed by transcriptomic analyses that link SA‑induced cell death to effector‑triggered immunity pathways.

salicylic acid circadian regulation starch and glucose metabolism oxidative stress glucose rescue

Six New Species and Two Reinstatements of Viola (Violaceae) from China

Authors: Huang, Y., Fan, Q.

Date: 2025-10-03 · Version: 1
DOI: 10.1101/2025.10.02.679011

Category: Plant Biology

Model Organism: Viola

AI Summary

Six new Viola species and two reinstated species from China were identified using field surveys, detailed morphological comparison, and phylogenetic analysis of ITS and GPI gene sequences, placing them in section Plagiostigma subsect. Diffusae. The GPI data offered higher resolution, indicating complex relationships possibly due to ancient hybridization or incomplete lineage sorting, thereby clarifying species boundaries and evolutionary patterns in Chinese Viola.

Viola new species phylogenetic analysis ITS GPI

Genome-wide Identification, Structural Features and Single-Cell Expression Atlas of the Carbonic Anhydrase Gene Family in Maize (Zea mays L.)

Authors: Gao, Y., Zhao, C.

Date: 2025-09-21 · Version: 1
DOI: 10.1101/2025.09.21.677582

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study provides a comprehensive genome-wide catalog and single‑cell expression atlas of the carbonic anhydrase (CA) gene family in maize, identifying 18 CA genes across α, β, and γ subfamilies and detailing their structural and regulatory features. Phylogenetic, synteny, promoter motif, bulk tissue RNA‑seq, and single‑cell RNA‑seq analyses reveal distinct tissue and cell‑type specific expression patterns, highlighting β‑CAs as key players in C4 photosynthesis and γ‑CAs in ion/pH buffering, and propose cell‑type‑specific CA genes as targets for improving stress resilience.

carbonic anhydrases maize single-cell RNA‑seq phylogenetic analysis stress resilience

The seed mitochondrial proteome of Lupinus albus provides insight into energy metabolism during germination

Authors: Angermann, C., Braun, H.-P., Hildebrandt, T. M.

Date: 2025-09-21 · Version: 1
DOI: 10.1101/2025.09.19.677279

Category: Plant Biology

Model Organism: Lupinus albus

AI Summary

The study provides a comprehensive proteomic analysis of seed mitochondria from white lupin, revealing fully assembled OXPHOS complexes ready for immediate energy production upon imbibition. Quantitative mass‑spectrometry identified 1,162 mitochondrial proteins, highlighting tissue‑specific transporter and dehydrogenase profiles and dynamic remodeling during early germination, while many uncharacterized proteins suggest novel legume‑specific functions.

seed mitochondria Lupinus albus proteomics oxidative phosphorylation germination

A plant-centric investigation of Class B Flavin-dependent Monooxygenase evolution and structural diversity

Authors: Christensen, J. M., Neilson, E. H.

Date: 2025-09-16 · Version: 1
DOI: 10.1101/2025.09.16.676513

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study presents a plant‑focused phylogenetic analysis of class B flavin‑dependent monooxygenases, identifying eight distinct families and revealing lineage‑specific diversification, especially in the NADPH‑binding domain. Using known FMOs as baits, they assembled flavin‑related proteins from key Viridiplantae lineages, performed domain architecture and motif analyses, and reclassified several families, providing a framework for future functional studies.

Class B flavin-dependent monooxygenases phylogenetic analysis Viridiplantae domain architecture motif analysis
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