The study investigates the role of the chromatin regulator MpSWI3, a core subunit of the SWI/SNF complex, in the liverwort Marchantia polymorpha. A promoter mutation disrupts male gametangiophore development and spermiogenesis, causing enhanced vegetative propagation, and transcriptomic analysis reveals that MpSWI3 regulates genes controlling reproductive initiation, sperm function, and asexual reproduction, highlighting its ancient epigenetic role in balancing vegetative and reproductive phases.

The study investigates the role of two ATP-binding cassette transporters, MpABCG1 and MpABCG36, in the sequestration of specialized metabolites within oil bodies of the liverwort Marchantia polymorpha. Loss‑of‑function mutants displayed reduced accumulation of sesquiterpenes and, specifically for MpABCG1, decreased levels of bis‑bibenzyls, while oil‑body formation remained largely unaffected, indicating these transporters are essential for metabolite accumulation rather than organelle biogenesis.

The study examined drought tolerance across nine provenances of the conifer Pinus nigra using high‑throughput phenotyping combined with metabolomic and transcriptomic analyses under controlled soil‑drying conditions. Drought tolerance, measured by the decline in Fv/Fm, varied among provenances but was not linked to a climatic gradient and was independent of growth, with tolerant provenances showing distinct flavonoid and diterpene profiles and provenance‑specific gene expression patterns. Integrating phenotypic and molecular data revealed metabolic signatures underlying drought adaptation in this non‑model conifer.

The study integrated 16 Arabidopsis thaliana whole‑genome bisulfite sequencing datasets from 13 stress experiments using a unified bioinformatic pipeline to map common and stress‑specific DNA methylation changes. Differentially methylated regions varied by stress type and methylation context, with CG DMRs enriched in gene bodies and CHG/CHH DMRs in transposable elements, some of which overlapped loci prone to stable epimutations. Gene ontology and TE enrichment analyses highlighted shared stress pathways and suggest environmental stress can generate heritable epigenetic variation.

The study created transgenic Arabidopsis lines enabling inducible plasmodesmal closure via an overactive CALLOSE SYNTHASE3 allele (icals3m) and the C‑terminal domain of PDLP1, independent of pathogen signals. Induced closure triggered stress‑responsive gene expression, elevated salicylic acid levels, and enhanced resistance to Pseudomonas syringae, while also causing starch accumulation, reduced growth, and increased susceptibility to Botrytis cinerea, indicating that plasmodesmal closure itself can activate immune signaling.

The study examined short‑term and transannual drought memory in cambium tissues of two Populus genotypes and four epitypes with modified DNA‑methylation machinery, revealing persistent hormone, transcript, and methylation changes one week after stress relief. Trees previously stressed in Year 1 displayed distinct physiological and molecular responses to a second drought in Year 2, indicating long‑term memory linked to stable CG‑context DNA methylation, with genotype‑dependent differences in plasticity and stability. These findings position the cambium as a reservoir for epigenetic stress memory and suggest exploitable epigenetic variation for tree breeding under drought.

The study identified twenty survival of SA-induced death (ssd) mutants that are defective in starch, glucose, nitrate metabolism, and circadian regulation, leading to excessive carbohydrate accumulation and susceptibility to salicylic acid (SA)-induced death in prolonged darkness. Glucose application rescues SA‑treated plants by antagonizing oxidative stress and restoring metabolic balance, as revealed by transcriptomic analyses that link SA‑induced cell death to effector‑triggered immunity pathways.

The study compared physiological and transcriptomic responses of poplar trees colonized by the ectomycorrhizal fungi Paxillus involutus or Cenococcum geophilum under normal, drought, and recovery conditions. Cenococcum-colonized plants showed constitutive up‑regulation of heat‑shock proteins, galactinol synthase, and aquaporins and maintained water status and photosynthesis during severe drought, whereas Paxillus colonization promoted growth and nitrogen‑use efficiency and enabled rapid recovery through drought‑induced leaf shedding. These contrasting strategies illustrate species‑specific positions on the growth‑defense trade‑off in ectomycorrhizal symbiosis.

The study characterizes the single-copy S-nitrosoglutathione reductase 1 (MpGSNOR1) in the liverwort Marchantia polymorpha, showing that loss-of-function mutants generated via CRISPR/Cas9 exhibit marked morphological defects and compromised SNO homeostasis and immune responses. These findings indicate that GSNOR-mediated regulation of S‑nitrosylation is an ancient mechanism linking development and immunity in early land plants.

The study used host-mediated artificial selection to iteratively enrich rice-associated microbiomes that improve growth and drought tolerance, starting from diverse soil microbial communities. Over multiple generations, selected microbiomes converged, and amplicon sequencing along with metagenome-assembled genomes identified specific bacterial taxa and functional pathways (e.g., glycerol-3-phosphate and iron transport) linked to enhanced drought performance. The results demonstrate the effectiveness of plant phenotype-driven microbiome engineering for crop improvement.