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AI-summarized plant biology research papers from bioRxiv

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Latest 47 Papers

Decoding stage-specific symbiotic programs in the Rhizophagus irregularis-tomato interaction using single-nucleus transcriptomics

Authors: Stuer, N., Leroy, T., Eekhout, T., De Keyser, A., Staut, J., De Rybel, B., Vandepoele, K., Van Damme, P., Van Dingenen, J., Goormachtig, S.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701092

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study generated the first single‑nucleus RNA‑sequencing dataset of tomato (Solanum lycopersicum) roots colonized by the arbuscular mycorrhizal fungus Rhizophagus irregularis, revealing distinct transcriptional programs in epidermal and cortical cells across stages of arbuscule development. Using unsupervised subclustering and a Motif‑Informed Network Inference (MINI‑EX) approach, the authors identified candidate transcription factors that may coordinate cell‑cycle reactivation and nutrient integration during symbiosis, offering a resource for future functional genetics.

arbuscular mycorrhizal symbiosis single-nucleus RNA sequencing Solanum lycopersicum transcription factor network inference root cortical development

A Savory-based Formulation for Sustainable Management of Early Blight caused by Alternaria solani and Preservation of Tomato Fruit Quality

Authors: Lak, F., Omrani, A., Nikkhah, M. J., Gohari, A. M., Nicolaisen, M., Abuali, M., Ahmadzadeh, M.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.20.700539

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study assessed three savory essential oil–based formulations for controlling early blight caused by Alternaria solani in tomato, finding that formulation CC2020 most effectively reduced disease severity in both in vitro and greenhouse trials. CC2020 also helped maintain tomato fruit vitamin C levels and lowered fungal melanin production, indicating dual benefits for disease suppression and fruit quality.

early blight Solanum lycopersicum savory essential oil biocompatible formulation fruit quality

CRK5 preserves antioxidant homeostasis and prevents cell death during dark-induced senescence through inhibiting the salicylic acid signaling pathway

Authors: Kamran, M., Burdiak, P., Rusaczonek, A., Zarrin Ghalami, R., Karpinski, S.

Date: 2026-01-12 · Version: 1
DOI: 10.64898/2026.01.12.698963

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the cysteine‑rich receptor‑like kinase CRK5 as a negative regulator of salicylic‑acid‑mediated cell death and a positive regulator of antioxidant homeostasis during dark‑induced leaf senescence in Arabidopsis. Loss‑of‑function crk5 mutants display accelerated senescence, elevated ROS and electrolyte leakage, and altered antioxidant enzyme activities, phenotypes that are rescued by suppressing SA biosynthesis or catabolism. Transcriptome analysis reveals extensive deregulation of senescence‑ and redox‑related genes, highlighting CRK5’s central role in coordinating hormonal and oxidative pathways.

dark-induced senescence salicylic acid signaling CRK5 receptor kinase reactive oxygen species antioxidant homeostasis

Physiological Characterization under the Influence of Drought Stress and Salicylic Acid in Valeriana wallichii DC

Authors: Ansari, S., Patni, B., Jangpangi, D., Joshi, H. C., Bhatt, M. K., Purohit, V.

Date: 2026-01-09 · Version: 1
DOI: 10.64898/2026.01.09.698547

Category: Plant Biology

Model Organism: Valeriana wallichii

AI Summary

The study investigated the ability of foliar-applied salicylic acid (SA) to alleviate drought stress in the high‑altitude medicinal plant Valeriana wallichii by measuring physiological and biochemical responses during vegetative and flowering stages. SA at specific concentrations improved photosynthetic rates, water‑use efficiency, chlorophyll content, membrane stability, and root biomass under both severe (25% field capacity) and moderate (50% field capacity) drought conditions. These results suggest that SA treatment enhances drought tolerance and productivity in this species.

drought stress salicylic acid Valeriana wallichii photosynthetic efficiency water use efficiency

Salicylic acid-induced alkalinization of the apoplast requires TRANSMEMBRANE KINASE 1 and results in growth attenuation

Authors: Mueller, J., Xhelilaj, K., Guichard, M., Kaiser, S., Grossmann, G., Tenhaken, R., Gronnier, J., Scheuring, D.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.12.02.691772

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that salicylic acid (SA) restricts plant root growth through a mechanism requiring the transmembrane kinase TMK1, which leads to apoplastic alkalinization and inhibition of plasma membrane H⁺-ATPase phosphorylation. This SA effect operates independently of the auxin receptor ABP1, suggesting a novel SA-mediated pathway that balances stress responses with growth.

salicylic acid TMK1 apoplastic alkalinization plasma membrane H⁺-ATPase root growth regulation

Identification of a putative RBOHD-FERONIA-CRK10-PIP2;6 plasma membrane complex that interacts with phyB to regulate ROS production in Arabidopsis thaliana

Authors: Mohanty, D., Fichman, Y., Pelaez-Vico, M. A., Myers, R. J., Sealander, M., Sinha, R., Morrow, J., Eckstein, R., Olson, K., Xu, C., An, H., Yoo, C. Y., Zhu, J.-K., Zhao, C., Zandalinas, S. I., Liscum, E., Mittler, R.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.23.689998

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that FERONIA and phytochrome B physically interact with the NADPH oxidase RBOHD, and that FERONIA-mediated phosphorylation of phyB is essential for RBOHD-driven ROS production under excess light stress in Arabidopsis thaliana. Additional membrane proteins CRK10 and PIP2;6 also associate with this complex, forming a plasma‑membrane assembly that integrates multiple signaling pathways to regulate stress‑induced ROS.

reactive oxygen species FERONIA phytochrome B RBOHD excess light stress

Proline transporters balance the salicylic acid-mediated trade-off between regeneration and immunity in plants

Authors: Yang, L., Xu, D., Belew, Z. M., Cassia Ferreira Dias, N., Wang, L., Zhang, A., Chen, Y.-F. S., Newton, C. J., Kong, F., Zheng, Y., Yao, Y., Brewer, M. T., Teixeira, P. J. P. L., Nour-Eldin, H. H., Xu, D.

Date: 2025-11-20 · Version: 1
DOI: 10.1101/2025.11.20.689487

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study identifies wound‑induced proline transporters ProT2 and ProT3 as central regulators that link salicylic acid signaling to the suppression of de novo root regeneration (DNRR) via modulation of reactive oxygen species dynamics. Genetic loss of these transporters or pharmacological inhibition of proline transport alleviates SA‑mediated regeneration inhibition across several plant species without compromising disease resistance.

salicylic acid proline transporters de novo root regeneration reactive oxygen species immunity‑regeneration trade‑off

Role of AtCPK5 and AtCPK6 in the regulation of the plant immune response triggered by rhamnolipids in Arabidopsis

Authors: STANEK, J., FERNANDEZ, O., BOUDSOCQ, M., AGGAD, D., VILLAUME, S., PARENT, L., DHONDT CORDELIER, S., CROUZET, J., DOREY, S., CORDELIER, S.

Date: 2025-10-23 · Version: 1
DOI: 10.1101/2025.10.22.683368

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study examined how Arabidopsis calcium‑dependent protein kinases AtCPK5 and AtCPK6 modulate immunity triggered by bacterial rhamnolipids, finding that RLs up‑regulate these kinases and that mutants, especially cpk5/6, show altered reactive oxygen species production and defense gene expression. However, these kinases did not influence RL‑induced electrolyte leakage or resistance to Pseudomonas syringae pv. tomato DC3000, indicating additional signaling components are involved.

rhamnolipids calcium dependent protein kinases Arabidopsis thaliana immunity reactive oxygen species defense gene expression

Spatiotemporal Analysis Reveals Mechanisms Controlling Reactive Oxygen Species and Calcium Interplay Following Root Compression

Authors: Vinet, P., Audemar, V., Durand-Smet, P., Frachisse, J.-M., Thomine, S.

Date: 2025-10-23 · Version: 1
DOI: 10.1101/2025.10.22.683952

Category: Plant Biology

Model Organism: General

AI Summary

Using a microfluidic valve rootchip, the study simultaneously tracked ROS and calcium dynamics in compressed roots and found three kinetic phases linking mechanosensitive channel activity, NADPH oxidase‑dependent ROS accumulation, and secondary calcium influx. Pharmacological inhibition revealed that a fast calcium response is mediated by plasma‑membrane mechanosensitive channels, while a slower calcium increase is driven by ROS production.

mechanotransduction reactive oxygen species calcium signaling microfluidic compression root biology

Plasmodesmal closure elicits stress responses

Authors: Tee, E., Breakspear, A., Papp, D., Thomas, H. R., Walker, C., Bellandi, A., Faulkner, C.

Date: 2025-10-17 · Version: 3
DOI: 10.1101/2024.05.08.593115

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study created transgenic Arabidopsis lines enabling inducible plasmodesmal closure via an overactive CALLOSE SYNTHASE3 allele (icals3m) and the C‑terminal domain of PDLP1, independent of pathogen signals. Induced closure triggered stress‑responsive gene expression, elevated salicylic acid levels, and enhanced resistance to Pseudomonas syringae, while also causing starch accumulation, reduced growth, and increased susceptibility to Botrytis cinerea, indicating that plasmodesmal closure itself can activate immune signaling.

plasmodesmata callose deposition salicylic acid immune response transgenic closure
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