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AI-summarized plant biology research papers from bioRxiv

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Jasmonate Primes Plant Responses to Extracellular ATP through Purinoceptor P2K1

Authors: Jewell, J. B., Carlton, A., Tolley, J. P., Bartley, L. E., Tanaka, K.

Date: 2025-08-12 · Version: 2
DOI: 10.1101/2024.11.07.622526

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that jasmonate (JA) enhances Arabidopsis thaliana responses to extracellular ATP (eATP) by upregulating the eATP receptor P2K1 and amplifying eATP‑induced cytosolic Ca²⁺ spikes and transcriptional reprogramming in a COI1‑dependent manner, whereas salicylic acid pretreatment suppresses these responses. These findings reveal a JA‑mediated priming mechanism that potentiates eATP signaling during stress.

extracellular ATP jasmonate signaling P2K1 receptor COI1 calcium signaling

The Rapid Mechanically Activated (RMA) channel transduces increases in plasma membrane tension into transient calcium influx

Authors: Guerringue, Y., Thomine, S., Allain, J.-M., Frachisse, J.-M.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668926

Category: Plant Biology

Model Organism: General

AI Summary

The study characterizes a plasma membrane-localized, calcium‑permeable force‑gated channel named Rapid Mechanically Activated (RMA) in plants, using patch‑clamp and pressure‑clamp to elucidate its rapid activation, inactivation, and irreversible adaptation upon repeated mechanical stimulation. Kinetic modeling shows the channel functions as a pass‑band filter for frequencies between 10 Hz and 1 kHz, supporting its role in transducing high‑frequency mechano‑stimuli such as insect vibrations.

mechanically activated calcium channel RMA channel calcium signaling high‑frequency mechanical stimulation kinetic modeling

Heat Stress and Soil Microbial Disturbance Influence Soybean Root Metabolite, Microbiome Profiles, and Nodulation

Authors: Elango, D., Van der Laan, L., Gholizadeh, S., Premarathne, M. D. G. P., Dutter, C. R., DePew, C., McDaniel, M., Singh, A. K.

Date: 2025-07-14 · Version: 1
DOI: 10.1101/2025.07.13.664636

Category: Plant Biology

Model Organism: Glycine max

AI Summary

The study investigated how native soil microbes affect heat tolerance in soybean (Glycine max) by comparing plants grown in natural versus microbiome‑disturbed soils under optimal and elevated temperatures. Using 16S rRNA and ITS sequencing alongside non‑targeted root metabolomics, the authors found significant shifts in bacterial and fungal communities, suppressed nodule‑forming bacteria, and altered root metabolites that correlated with reduced nodulation efficiency under heat stress. Integrated multi‑omics analyses linked microbial composition to metabolite profiles and nitrogen‑fixation traits, highlighting a coordinated response of the root physiological system to combined heat and microbiome perturbations.

heat stress rhizosphere microbiome soybean root metabolomics nitrogen fixation

Single-cell-resolved calcium and organelle dynamics in resistosome-mediated cell death

Authors: Chen, Y.-F., Lin, K.-Y., Huang, C.-Y., Hou, L.-Y., Yuen, E. L. H., Sun, W.-C. J., Chiang, B.-J., Chang, C.-W., Wang, H.-Y., Bozkurt, T. O., Wu, C.-H.

Date: 2025-07-01 · Version: 1
DOI: 10.1101/2025.06.27.662017

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study visualizes subcellular dynamics following activation of the NRC4 resistosome, showing that NRC4 enrichment at the plasma membrane triggers calcium influx, followed by sequential disruption of mitochondria, plastids, endoplasmic reticulum, and cytoskeleton, culminating in plasma membrane rupture and cell death. These observations define a temporally ordered cascade of organelle and membrane events that execute plant immune cell death.

NLR resistosome calcium signaling organelle disruption cell death cascade plant immunity

The CATION CALCIUM EXCHANGER 4 (CCX4) regulates LRX1-related root hair development through Ca2+ homeostasis

Authors: Hou, X., Tortora, G., Herger, A., Buratti, S., Dobrev, P. I., Vaculikov, R., Lacek, J., Sotiropoulos, A. G., Kadler, G., Schaufelberger, M., Candeo, A., Bassi, A., Wicker, T., Costa, A., Ringli, C.

Date: 2025-06-27 · Version: 1
DOI: 10.1101/2025.06.25.660713

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identified a suppressor mutation (sune42) in the Golgi-localized Ca2+ transporter CCX4 that alleviates the dominant‑negative root hair phenotype caused by the extensin‑less LRX1ΔE14 protein in Arabidopsis. Detailed Ca2+ imaging showed that LRX1ΔE14 disrupts tip‑focused cytoplasmic Ca2+ oscillations, a defect rescued by the sune42 mutation, highlighting the role of Golgi‑mediated Ca2+ homeostasis in root hair growth.

calcium signaling root hair development LRX1 extensin domain CCX4 Golgi transporter Ca2+ homeostasis

Spatial Coordination between Leaf Gradient and Temperature Response in Barley

Authors: Fernandez, E. C., Tu, G., Dai, W., Yang, S., Liu, Z., Grzybowski, M., Liang, Z.

Date: 2025-06-27 · Version: 1
DOI: 10.1101/2025.06.24.661333

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study used chlorophyll fluorescence imaging to map non-photochemical quenching (NPQ) gradients along barley leaf axes and found heat stress attenuates NPQ induction, revealing spatial heterogeneity in stress responses. Genome‑wide association and transcriptomic analyses identified candidate genes, notably HORVU.MOREX.r3.3HG0262630, that mediate region‑specific heat responses, highlighting pathways for improving cereal heat resilience.

Barley (Hordeum vulgare) heat stress chlorophyll fluorescence imaging NPQ kinetics GWAS

Multi-Omics Analysis of Heat Stress-Induced Memory in Arabidopsis

Authors: Thirumlaikumar, V. P. P., Yu, L., Arora, D., Mubeen, U., Wisniewski, A., Walther, D., Giavalisco, P., Alseekh, S., DL Nelson, A., Skirycz, A., Balazadeh, S.

Date: 2025-06-23 · Version: 1
DOI: 10.1101/2025.06.19.660594

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study uses a high‑throughput comparative multi‑omics strategy to profile transcript, metabolite, and protein dynamics in Arabidopsis thaliana seedlings throughout the heat‑stress memory (HSM) phase following acquired thermotolerance. Early recovery stages show rapid transcriptional activation of memory‑related genes, while protein levels stay elevated longer, and distinct metabolite patterns emerge, highlighting temporal layers of the memory process.

heat stress acquired thermotolerance heat stress memory multi-omics Arabidopsis thaliana

Dynamic changes to the plastoglobule lipidome and proteome in heat-stressed maize

Authors: Devadasu, E., Susanto, F. A., Schilmiller, A. L., Johnny, C., Lundquist, P. K.

Date: 2025-06-19 · Version: 1
DOI: 10.1101/2025.06.13.659543

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study tracked molecular changes in plastoglobules and thylakoids of Zea mays B73 during heat stress and recovery, revealing increased plastoglobule size, number, and adjacent lipid droplets over time. Proteomic and lipidomic analyses uncovered up‑regulation of specific plastoglobule proteins and alterations in triacylglycerol, plastoquinone derivatives, and phytol esters, suggesting roles in membrane remodeling and oxidative defense. These insights highlight plastoglobule‑associated pathways as potential targets for enhancing heat resilience in maize.

heat stress plastoglobules lipid composition Zea mays proteomics

Non-Thermal Plasma Activated Water is an Effective Nitrogen Fertilizer Alternative for Arabidopsis thaliana

Authors: Kizer, J. J., Robinson, C. D., Lucas, T., Shannon, S., Hernandez, R., Stapelmann, K., Rojas-Pierce, M.

Date: 2025-06-17 · Version: 1
DOI: 10.1101/2025.06.12.659237

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study compared two plasma‑activated water (PAW) solutions with different H₂O₂ levels, produced by a radio‑frequency glow discharge, on Arabidopsis thaliana growth and stress responses. PAW lacking detectable H₂O₂ promoted seedling growth and induced nitrogen‑assimilation genes, while H₂O₂‑containing PAW did not affect growth but enhanced root performance under heat stress; mature plants fertilized with H₂O₂‑free PAW performed comparably to nitrate controls. These results indicate PAW can replace NO₃⁻ fertilizers provided H₂O₂ levels are carefully managed.

plasma activated water hydrogen peroxide reactive oxygen species nitrogen uptake heat stress

Salicylic acid accumulation correlates with low anthocyanin production in Arabidopsis

Authors: Drs, M., Iakovenko, O., Orozco, J. S. H., Trhlinova, P. B., Markovice, V., Zarsky, V., Pecenkova, T., Janda, M.

Date: 2025-06-08 · Version: 1
DOI: 10.1101/2025.06.08.658514

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that elevated endogenous salicylic acid (SA) levels suppress anthocyanin accumulation in Arabidopsis thaliana under anthocyanin‑inducing conditions, a effect confirmed by exogenous SA applications. Microscopic analysis of the 5gt mutant further reveals that high SA reduces the abundance of anthocyanin vesicular inclusions, suggesting that SA downstream signaling, independent of NPR1, mediates this inhibition.

salicylic acid anthocyanin biosynthesis Arabidopsis thaliana pattern‑triggered immunity anthocyanin vesicular inclusions
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