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AI-summarized plant biology research papers from bioRxiv

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Latest 3 Papers

Rapid population flux in bacterial spot xanthomonads during a transition in dominance between two genotypes in consecutive tomato production seasons and identification of a new species Xanthomonas oklahomensis sp. nov.

Authors: Johnson, B., Subedi, A., Damicone, J., Goss, E., Jones, J. B., Jibrin, M. O.

Date: 2025-04-16 · Version: 1
DOI: 10.1101/2025.04.13.648550

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study examined Xanthomonas strains causing bacterial spot on tomato in Oklahoma fields during 2018‑2019, revealing a shift from X. euvesicatoria pv. euvesicatoria (Xee) to X. euvesicatoria pv. perforans (Xep) race T4, which also expanded to pepper. Phenotypic assays and whole‑genome sequencing highlighted differences in race composition, host range, copper sensitivity, and effector repertoires, and identified a novel species, Xanthomonas oklahomensis.

bacterial spot Xanthomonas euvesicatoria population shift phylogenetic analysis copper resistance

Loss of tomato geranylgeranyl diphosphate synthase 2 increases monoterpenoid levels and enhances immune responses to bacterial infection

Authors: Perez-Perez, J., Ezquerro, M., Lim, S., Ha, S.-H. S. H., Lopez-Gresa, M. P., Rodriguez-Concepcion, M., Lison, P.

Date: 2025-03-26 · Version: 1
DOI: 10.1101/2025.03.24.644926

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study investigated three plastidial GGPP synthase isoforms in tomato, focusing on SlG2’s role in volatile isoprenoid production and disease resistance. CRISPR-edited slg2 mutants exhibited elevated geranyl diphosphate-derived monoterpenes and higher salicylic acid levels, leading to increased resistance against Pseudomonas syringae infection. The authors propose that SlG2 modulates GPP synthesis by competing for heterodimerization with SSU-I proteins.

GGPP synthase SlG2 monoterpenes salicylic acid Pseudomonas syringae infection

Phenotypic similarity of NAD(P)-Malic Enzymes in Tomato: Unveiling Patterns of Convergent and Parallel Evolution

Authors: Martinatto, A., Bohm, J. M., Bustamante, C., Pancaldi, F., Schranz, M. E., Tronconi, M.

Date: 2025-02-16 · Version: 1
DOI: 10.1101/2025.02.12.637823

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study characterizes all seven malic enzyme genes in tomato, analyzing their tissue-specific expression, temperature and ethylene responsiveness, and linking specific isoforms to metabolic processes such as starch and lipid biosynthesis during fruit development. Phylogenetic, synteny, recombinant protein biochemical assays, and promoter analyses were used to compare tomato enzymes with Arabidopsis counterparts, revealing complex evolutionary dynamics that decouple phylogeny from functional orthology.

malic enzyme NADP-ME Solanum lycopersicum gene expression phylogenetic analysis