The study investigates the molecular basis of heat‑tolerant pollen tube growth in tomato (Solanum lycopersicum) by comparing thermotolerant and sensitive cultivars. Using live imaging, transcriptomics, proteomics, and genetics, the authors identified the Rapid Alkalinization Factor (RALF) signaling pathway as a key regulator of pollen tube integrity under high temperature, with loss of a specific RALF peptide enhancing tube integrity in a thermotolerant cultivar.

The study applied limited proteolysis‑coupled mass spectrometry (LiP‑MS) to map JA‑protein interactions, validating known JA binders and uncovering novel candidates, including several UDP‑glucuronosyltransferases (UGTs). Functional omics, biochemical, enzymatic, and structural analyses demonstrated that two tomato UGTs glucosylate jasmonic acid, revealing a previously missing step in JA catabolism.

The study assessed the impact of adding mammalian growth factors and cytokines to transformation media on CRISPR‑Cas9–mediated genome editing in six tomato (Solanum lycopersicum) accessions with varying regeneration capacities. Over three years, supplementation with these factors significantly increased regeneration rates and the production of stable secondary transgenic lines, especially in recalcitrant genotypes.

The researchers created tomato lines overexpressing the autophagy gene SlATG8f and evaluated their performance under high-temperature stress. qRT‑PCR and physiological measurements revealed that SlATG8f overexpression enhances expression of autophagy‑related and heat‑shock protein genes, accelerates fruit ripening, and improves fruit quality under heat stress.

Proteomic comparison of mock‑ and potato spindle tuber viroid‑infected tomato revealed a broad down‑regulation of nucleoporins and nuclear transport receptors, leading to impaired nuclear import of the immune regulator NPR1. Overexpression of NPR1 or treatment with a salicylic‑acid analog restored defense and reduced PSTVd infection, highlighting nuclear transport repression as a key vulnerability in plant immunity against viroids.

The study identifies an autophagy pathway that degrades plasma membrane-derived clathrin-coated vesicles (CCVs) during hyperosmotic stress, helping maintain membrane tension as cell volume decreases. Using live imaging and correlative microscopy, the authors show that the TPLATE complex subunits AtEH1/Pan1 and AtEH2/Pan1 act as selective autophagy receptors by directly binding ATG8, thereby removing excess membrane under drought or salt conditions.

The study investigates autophagy’s protective role against cadmium stress in Arabidopsis thaliana by comparing wild-type, atg5 and atg7 autophagy-deficient mutants, and ATG5/ATG7 overexpression lines. Cadmium exposure triggered autophagy, shown by ATG8a-PE accumulation, GFP-ATG8a fluorescence and ATG gene up-regulation, with atg5 mutants displaying heightened Cd sensitivity and disrupted metal ion homeostasis, whereas overexpression had limited impact. Genotype-specific differences between Col-0 and Ws backgrounds were also observed.

The study introduces a native‑condition method combining cell fractionation and immuno‑isolation to purify autophagic compartments from Arabidopsis, followed by proteomic and lipidomic characterisation of the isolated phagophore membranes. Proteomic profiling identified candidate proteins linked to autophagy, membrane remodeling, vesicular trafficking and lipid metabolism, while lipidomics revealed a predominance of glycerophospholipids, especially phosphatidylcholine and phosphatidylglycerol, defining the unique composition of plant phagophores.

The study reveals that the methyl‑CpG‑binding domain protein MBD8 interacts with the histone demethylase LDL2 to facilitate removal of H3K4me1 and transcriptional repression downstream of H3K9me2 in Arabidopsis. MBD8 binds GC‑poor DNA independently of cytosine methylation and stabilizes LDL2 protein levels, indicating a broader role for MBD proteins beyond methyl‑DNA recognition.

The study isolated an endophytic Pseudomonas aeruginosa strain (SPT08) from tomato cotyledon seedlings that suppressed the wilt pathogen Ralstonia pseudosolanacearum and promoted plant growth, increasing height by 20% and root biomass by 60%. GFP labeling confirmed endophytic colonization, and genomic analysis revealed multiple secretion systems and secondary‑metabolite gene clusters associated with biocontrol and growth‑promoting traits.