Keywords: transcriptomic analysis, decoding modules, SNP array, QTL mapping, transcriptomics, ascorbate

Latest 54 Papers

Parallel adaptation and admixture drive the evolution of virulence in the grapevine downy mildew pathogen

Authors: DVORAK, E., DUMARTINET, T., MAZET, I. D., CHATAIGNER, A., Paineau, M., CANTU, D., MESTRE, P., FOULONGNE-ORIOL, M., DELMOTTE, F.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.18.654733

Model Organism: Plasmopara viticola

Plasmopara viticola grapevine downy mildew QTL mapping AvrRpv12 RXLR effectors

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Comparative multi-omics profiling of Gossypium hirsutum and Gossypium barbadense fibers at high temporal resolution reveals key differences in polysaccharide composition and associated glycosyltransferases

Authors: Swaminathan, S., Lee, Y., Grover, C. E., DeTemple, M. F., Mugisha, A. S., Sichterman, L. E., Yang, P., Xie, J., Wendel, J. F., Szymanski, D. B., Zabotina, O. A.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650795

Model Organism: Multi-species

cotton fiber development polysaccharide composition glycome profiling transcriptomics glycosyltransferases

ERF transcription factor regulons underpin growth-defence trade-off under acute heat stress in rice seedlings

Authors: Nair, A. U., Vishwakarma, S., Guha, T., Kadumuri, R. V., Fritschi, F. B., Chavali, S., Allu, A. D.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.21.649784

Model Organism: Oryza sativa

heat stress Oryza sativa seedling transcriptomics ethylene responsive factors phytohormone treatment

A transcriptional dissection of the petty spurge (Euphorbia peplus L.) reproductive structure

Authors: Johnson, A. R., Bao, A., Frank, M. H.

Date: 2025-04-17 · Version: 2

DOI: 10.1101/2024.05.06.592779

Model Organism: Euphorbia peplus

cyathium transcriptomics floral development genes SEP1 paralogs Euphorbia peplus

Arabidopsis CNL receptor SUT1 confers immunity in hydathodes against the vascular pathogen Xanthomonas campestris pv. campestris

Authors: Taks, N. W., van Hulten, M., van Splunter-Berg, J. A., Chatterjee, S., Stevens, F. D., Paauw, M., Pfeilmeier, S., van den Burg, H. A.

Date: 2025-04-11 · Version: 2

DOI: 10.1101/2024.06.20.599835

Model Organism: Arabidopsis thaliana

hydathode Xanthomonas campestris pv. campestris Arabidopsis thaliana SUT1 QTL mapping

Welcome pathogens: transient heat dampens the responses to acibenzolar-S-methyl beyond defenses in apple plants

Authors: Chavonet, E., Nguyen, B.-h., Heintz, C., Cournol, R., Siroka, J., Novak, O., Larbat, R., Gaucher, M., Brisset, M.-N., Pantin, F., Degrave, A.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647103

Model Organism: Malus domestica

heat stress acibenzolar‑S‑methyl (ASM)induced immunity apple (Malus domestica)transcriptomics

Omics-driven Identification of Candidate Genes and SNP markers in a Major QTL Controlling Early Heading in Rice

Authors: Rao, D., T, N. S., CG, G., Gaur, N., Jamaloddin, M., Maganti, S. M., Raman, M. S., Patel, H. K., Tiwari, S., Sonti, R. V.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.25.645207

Model Organism: Oryza sativa

heading date rice (Oryza sativa)QTL-seq SNP markers transcriptomics

Multilevel analysis of response to plant growth promoting and pathogenic bacteria in Arabidopsis roots and the role of CYP71A27 in this response

Authors: Koprivova, A., Ristova, D., Berka, M., Berkova, V., Türksoy, G. M., Andersen, T. G., Westhoff, P., Cerny, M., Kopriva, S.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.26.645393

Model Organism: Arabidopsis thaliana

CYP71A27 plant‑microbe interaction Pseudomonas fluorescens CH267 Burkholderia glumeae PG1 transcriptomics

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

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