Keywords: transcriptomic reprogramming, CO2-fixing enzyme, spatial transcriptomics, deep learning, heat stress

Latest 49 Papers

Unraveling the cis-regulatory code controlling abscisic acid-dependent gene expression in Arabidopsis using deep learning

Authors: Opdebeeck, H., Smet, D., Thierens, S., Minne, M., De Beukelaer, H., Zuallaert, J., Van Bel, M., Van Montagu, M., Degroeve, S., De Rybel, B., Vandepoele, K.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657584

Model Organism: Arabidopsis thaliana

Abscisic acid Arabidopsis thaliana deep learning promoter motifs ABF binding sites

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

Transcriptomic profiling of desert tree Prosopis cineraria under heat stress reveals potential role of multiple gene families in its high thermotolerance

Authors: Sehgal, H., Sharma, R. A., Joshi, M.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.31.652403

Model Organism: Prosopis cineraria

heat stress thermotolerance differentially expressed genes transcriptome sequencing real-time qPCR

m6A RNA methylation attenuates thermotolerance in Arabidopsis

Authors: Shekhawat, K., Sheikh, A., Nawaz, K., Fatima, A., Alzayed, W., Nagaranjan, A. P., Hirt, H.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.22.655480

Model Organism: Arabidopsis thaliana

heat stress m6A RNA methylation thermotolerance Arabidopsis thaliana H3K4me3 histone modification

Integrative analysis of plant responses to a combination of water deficit, heat stress and eCO2 reveals a role for OST1 and SLAH3 in regulating stomatal responses

Authors: Pelaez-Vico, M. A., Sinha, R., Ghani, A., Lopez-Climent, M. F., Joshi, T., Fritschi, F. B., Zandalinas, S. I., Mittler, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.07.652739

Model Organism: Arabidopsis thaliana

Global Change Factor combination stomatal aperture regulation Arabidopsis thaliana water deficit heat stress

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Transcriptomic and physiological responses of soybean plants subjected to a combination of water deficit and heat stress under field conditions

Authors: Sinha, R., Pelaez-Vico, M. A., Dhakal, S., Ghani, A., Myers, R., Verma, M., Shostak, B., Ogden, A., Krueger, C. B., Costa Netto, J. R., Zandalinas, S. I., Joshi, T., Fritschi, F. B., Mittler, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.07.652738

Model Organism: Glycine max

water deficit heat stress combined stress field transcriptomics soybean

Analysing the Role of KIN10 in Directional Root Growth Regulation in Arabidopsis thaliana

Authors: Retzer, K., Garcia-Gonzalez, J., Muller, K., Lacek, J., Pree, S., Friedl, N., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650732

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 carbon availability root growth regulation hormone signaling transcriptomic reprogramming

Deciphering the Sequence Basis and Application of Transcriptional Initiation Regulation in Plant Genomes Through Deep Learning

Authors: Gao, P., Lian, L., Feng, W., Ma, Y., Lin, J., Qin, L., Hao, S., Zhao, H., Liu, X., Yuan, J., Lin, Z., Li, X., Guan, Y., Wang, X.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.22.649999

Model Organism: Glycine max

transcription start site promoter motifs deep learning soybean domestication plant gene regulation

ERF transcription factor regulons underpin growth-defence trade-off under acute heat stress in rice seedlings

Authors: Nair, A. U., Vishwakarma, S., Guha, T., Kadumuri, R. V., Fritschi, F. B., Chavali, S., Allu, A. D.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.21.649784

Model Organism: Oryza sativa

heat stress Oryza sativa seedling transcriptomics ethylene responsive factors phytohormone treatment

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