Keywords: transcriptomic reprogramming, spatial transcriptomics, proteome analysis, SWI3

Latest 11 Papers

Phosphite, an analog of phosphate, counteracts Phosphate Induced Susceptibility of rice to the blast fungus Magnaporthe oryzae

Authors: Mallavarapu, M. D., Martin-Cardoso, H., Bücker, G., Alussi, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.22.700763

Model Organism: Multi-species

phosphite (Phi)phosphate (Pi)plant immunity pathogen resistance transcriptomic reprogramming

Regulation of spikelet number during wheat spike development

Authors: Li, C., Li, K., Zhang, C., Dubcovsky, J.

Date: 2026-01-08 · Version: 1

DOI: 10.64898/2026.01.07.698073

Model Organism: Triticum aestivum

spikelet number per spike wheat inflorescence development florigen (FT1)spatial transcriptomics single‑cell analysis

Splicing regulation by RS2Z36 controls ovary patterning and fruit growth in tomato

Authors: Vraggalas, S., Rosenkranz, R. R., Keller, M., Perez-Perez, Y., Bachiri, S., Zehl, K., Bold, J., Simm, S., Ghatak, A., Weckwerth, W., Afjehi-Sadat, L., Chaturvedi, P., Testillano, P. S., Mueller-McNicoll, M., Zarnack, K., Fragkostefanakis, S.

Date: 2025-12-02 · Version: 2

DOI: 10.1101/2025.01.31.635986

Model Organism: Solanum lycopersicum (tomato)

RS2Z36 alternative splicing tomato fruit development ovary patterning proteome analysis

Spatiotemporal regulation of arbuscular mycorrhizal symbiosis at cellular resolution

Authors: Chancellor, T., Ferreras-Garrucho, G., Akmakjian, G. Z., Montero, H., Bowden, S. L., Hope, M., Wallington, E., Bhattacharya, S., Korfhage, C., Bailey-Serres, J., Paszkowski, U.

Date: 2025-11-02 · Version: 1

DOI: 10.1101/2025.10.31.685811

Model Organism: Oryza sativa

arbuscular mycorrhizal symbiosis spatial transcriptomics TRAP-seq arbuscule development nutrient transport

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear

Authors: Qu, Y., Tan, C., Yang, L., Pasquariello, M., Alabdullah, A. K., Sun, S., Iqbal, M., Salamon, J., Boden, S.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.12.670006

Model Organism: Triticum aestivum

spikelet development spatial transcriptomics wheat inflorescence RAMOSA2 ALOG1

Plant-Compatible Xenium In Situ Sequencing: Optimised Protocol for Spatial Transcriptomics in Medicago truncatula Roots and Nodules

Authors: Jhu, M.-Y., Heffer, J., Deamer, A., Moraes, T. A., Piskorz, A. M., Xia, C.

Date: 2025-07-25 · Version: 1

DOI: 10.1101/2025.07.22.663073

Model Organism: Medicago truncatula

spatial transcriptomics Xenium in situ sequencing Medicago truncatula root nodules autofluorescence mitigation

Spatial transcriptomics of developing wheat seed reveals radial expression patterns in endosperm and subgenome biased expression of key genes

Authors: Millsteed, T., Kainer, D., Sullivan, R., Sun, X., Li, K. L., Mao, L., Macdonald, A., Henry, R. J.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658529

Model Organism: Triticum aestivum

spatial transcriptomics wheat seed development endosperm gene expression subgenome bias STOmics platform

Spatial and single-cell transcriptomics capture two distinct cell states in plant immunity

Authors: Hu, Y., Schaefer, R., Rendleman, M., Slattery, A., Cramer, A., Nahiyan, A., Breitweiser, L., Shah, M., Kaehler, E., Yao, C., Bowling, A., Crow, J., May, G., Tabor, G., Thatcher, S., Uppalapati, S. R., Muppirala, U., Deschamps, S.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657683

Model Organism: Glycine max

spatial transcriptomics single-nuclei RNA-seq plant immunity Phakopsora pachyrhizi cell non‑autonomous defense

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

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