Genetius

AI-summarized plant biology research papers from bioRxiv

View Trends

Latest 311 Papers

PDLP5 regulates aquaporin-mediated hydrogen peroxide transport in Arabidopsis

Authors: Li, Z., Liu, S.-L., Islam, S., Clements, M., Chen, Y., Aung, K.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.21.700913

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that plasmodesmata‑located protein 5 (PDLP5) interacts with plasma membrane intrinsic proteins (PIPs) to inhibit H2O2 transport across the plasma membrane in Arabidopsis. Overexpression of PDLP5 reduces H2O2 uptake and diminishes H2O2‑induced root growth inhibition, whereas pdlp5 mutants show enhanced sensitivity, with PIP2;5 identified as a key target of this regulation.

Aquaporins Plasma membrane intrinsic proteins (PIPs) PDLP5 Hydrogen peroxide transport Arabidopsis thaliana

Decoding stage-specific symbiotic programs in the Rhizophagus irregularis-tomato interaction using single-nucleus transcriptomics

Authors: Stuer, N., Leroy, T., Eekhout, T., De Keyser, A., Staut, J., De Rybel, B., Vandepoele, K., Van Damme, P., Van Dingenen, J., Goormachtig, S.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701092

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study generated the first single‑nucleus RNA‑sequencing dataset of tomato (Solanum lycopersicum) roots colonized by the arbuscular mycorrhizal fungus Rhizophagus irregularis, revealing distinct transcriptional programs in epidermal and cortical cells across stages of arbuscule development. Using unsupervised subclustering and a Motif‑Informed Network Inference (MINI‑EX) approach, the authors identified candidate transcription factors that may coordinate cell‑cycle reactivation and nutrient integration during symbiosis, offering a resource for future functional genetics.

arbuscular mycorrhizal symbiosis single-nucleus RNA sequencing Solanum lycopersicum transcription factor network inference root cortical development

A Savory-based Formulation for Sustainable Management of Early Blight caused by Alternaria solani and Preservation of Tomato Fruit Quality

Authors: Lak, F., Omrani, A., Nikkhah, M. J., Gohari, A. M., Nicolaisen, M., Abuali, M., Ahmadzadeh, M.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.20.700539

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study assessed three savory essential oil–based formulations for controlling early blight caused by Alternaria solani in tomato, finding that formulation CC2020 most effectively reduced disease severity in both in vitro and greenhouse trials. CC2020 also helped maintain tomato fruit vitamin C levels and lowered fungal melanin production, indicating dual benefits for disease suppression and fruit quality.

early blight Solanum lycopersicum savory essential oil biocompatible formulation fruit quality

Microtubules in Arabidopsis pollen tubes are oriented away from the tube apex and are actin-independent at the cortex

Authors: Coomey, J. H., Gallup, E. R., Dixit, R.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.21.700958

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study used live-cell fluorescence imaging of Arabidopsis thaliana pollen tubes co-expressing labeled tubulin and actin to reveal partial co-localization of the two cytoskeletal networks. Pharmacological disruption showed that microtubules depend on actin for stability in the medial region, while actin remains unaffected by microtubule loss, indicating spatially dependent cytoskeletal crosstalk. Tracking of the microtubule plus‑end binding protein EB1b demonstrated that the microtubule array is primarily parallel with plus ends oriented away from the apex.

pollen tube actin–microtubule interaction Arabidopsis thaliana live-cell fluorescence imaging EB1b plus‑end tracking

The parasitic plant Phtheirospermum japonicum suppresses host immunity

Authors: Bhukya, D. P. N., Spallek, T.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.20.700512

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that invasion of Arabidopsis thaliana roots by the parasitic plant Phtheirospermum japonicum induces a phosphate‑starvation response in the host, which in turn leads to systemic suppression of immunity. This immunosuppression makes Arabidopsis more vulnerable to secondary microbial infections, highlighting the importance of multitrophic interactions in crop resilience.

parasitic plant invasion phosphate starvation response systemic immune suppression multitrophic interactions Arabidopsis thaliana

Initiation of asexual reproduction by the AP2/ERF gene GEMMIFER in Marchantia polymorpha

Authors: Takahashi, G., Yamaya, S., Romani, F., Bonter, I., Ishizaki, K., Shimamura, M., Kiyosue, T., Haseloff, J., Hirakawa, Y.

Date: 2026-01-16 · Version: 1
DOI: 10.64898/2026.01.16.699827

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study identifies the AP2/ERF transcription factor GEMMIFER (MpGMFR) as essential for asexual reproduction in the liverwort Marchantia polymorpha, showing that loss of MpGMFR via genome editing or amiRNA abolishes gemma and gemma cup formation, while dexamethasone‑induced activation triggers their development. Transient strong activation of MpGMFR initiates gemma initial cells at the meristem, which mature into functional gemmae, indicating MpGMFR is both necessary and sufficient for meristem‑derived asexual propagule formation.

MpGMFR AP2/ERF gemmae Marchantia polymorpha asexual reproduction

The circadian clock gates lateral root development

Authors: Nomoto, S., Mamerto, A., Ueno, S., Maeda, A. E., Kimura, S., Mase, K., Kato, A., Suzuki, T., Inagaki, S., Sakaoka, S., Nakamichi, N., Michael, T. P., Tsukagoshi, H.

Date: 2026-01-15 · Version: 1
DOI: 10.64898/2026.01.14.699582

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the circadian clock component ELF3 as a temporal gatekeeper that limits hormone‑induced pericycle proliferation and lateral root development in Arabidopsis thaliana. Time‑resolved transcriptomics, imaging, and genetic analyses show that ELF3 maintains rhythmic expression of key regulators via LNK1 and MADS‑box genes, and that loss of ELF3 disrupts this rhythm, enhancing callus growth and accelerating root organogenesis.

circadian clock ELF3 lateral root development hormonal signaling Arabidopsis thaliana

Physics-Informed Neural Network Methods for Predicting Plant Height Development

Authors: Shao, Y., van Eeuwijk, F., Peeters, C., Zumsteg, O., Athanasiadis, I., van Voorn, G.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.14.699475

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study introduces a hybrid modeling framework that integrates a logistic ordinary differential equation with a Long Short-Term Memory neural network to form a Physics-Informed Neural Network (PINN) for predicting wheat plant height. Using only time and temperature as inputs, the PINN outperformed other longitudinal growth models, achieving the lowest average RMSE and reduced variability across multiple random initializations. The results suggest that embedding biological growth constraints within data‑driven models can substantially improve prediction accuracy for plant traits.

Physics-Informed Neural Network logistic ODE Long Short-Term Memory plant height prediction wheat

Root phenolics as potential drivers of preformed defenses and reduced disease susceptibility in a paradigm bread wheat mixture

Authors: Mathieu, L., Chloup, A., Marty, S., Savajols, J., Paysant-Le Roux, C., Launay-Avon, A., Martin, M.-L., Totozafy, J.-C., Perreau, F., Rochepeau, A., Rouveyrol, C., Petriacq, P., Morel, J.-B., Meteignier, L.-V., Ballini, E.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.13.699261

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study created a system that blocks root‑mediated signaling between wheat varieties in a varietal mixture and used transcriptomic and metabolomic profiling to reveal that root chemical interactions drive reduced susceptibility to Septoria tritici blotch, with phenolic compounds emerging as key mediators. Disruption of these root signals eliminates both the disease resistance phenotype and the associated molecular reprogramming.

root-mediated interactions bread wheat Septoria tritici blotch transcriptomics metabolomics

Cytokinin Senescence Delay Is Shaped by Receptor Specificity and Metabolic Stability

Authors: Hasannin, O., Khanna, R. R., Singh, S., Petrik, I., Strnad, M., Novak, O., Cerny, M., Rashotte, A. M.

Date: 2026-01-13 · Version: 1
DOI: 10.64898/2026.01.12.699116

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that cytokinin (CK) signaling strength is governed by the interplay of receptor preference and metabolic stability of individual CK isoforms, affecting tissue-specific responses in Arabidopsis. Using physiological, genetic, and multi-omics approaches, the authors show that dihydrozeatin compensates for lower receptor affinity with higher persistence during senescence, while N‑glucoside CKs modulate signaling intensity in a ratio‑dependent manner.

cytokinin isoforms receptor affinity metabolic persistence Arabidopsis thaliana N‑glucoside modulation
Page 1 of 32 Next