High-quality PacBio HiFi draft genome assemblies were generated for three Bouteloua species (B. curtipendula, B. gracilis, B. eriopoda) with >98.5% BUSCO completeness. Gene prediction with Helixer produced inflated gene counts likely reflecting polyploidy and fragmented predictions, and panEDTA identified 25–40% transposable-element content dominated by LTR retrotransposons. These assemblies provide foundational references for comparative genomics within PACMAD grasses.
Regenerative agriculture effects on biomass, drought resilience and 14C-photosynthate allocation in wheat drilled into ley compared to disc or ploughed arable soil
Authors: Austen, N., Short, E., Tille, S., Johnson, I., Summers, R., Cameron, D. D., Leake, J. R.
Regenerative agriculture using a grass-clover ley increased wheat yields and macroaggregate stability despite reduced root biomass, but did not enhance soil carbon sequestration as measured by 14C retention. Drought further decreased photosynthate allocation to roots, especially in ley soils, while genotype effects on yield were minimal.
The study examined how soil phosphorus and nitrogen availability influence wheat root-associated arbuscular mycorrhizal fungal (AMF) communities and the expression of mycorrhizal nutrient transporters. Field sampling across two years combined with controlled pot experiments showed that P and N jointly affect AMF colonisation, community composition (with Funneliformis dominance under high P), and regulation of phosphate, ammonium, and nitrate transporters. Integrating metabarcoding and RT‑qPCR provides a framework to assess AMF contributions to crop nutrition.
The study compared aphid resistance and Barley Yellow Dwarf Virus (BYDV) transmission among three wheat varieties (G1, RGT Wolverine, RGT Illustrious). G1 emits the repellent 2‑tridecanone, restricts aphid phloem access, and shows reduced BYDV transmission, whereas RGT Wolverine limits systemic viral infection despite high transmission efficiency. The authors suggest breeding the two resistance mechanisms together for improved protection.
The study adapted high‑throughput transposable‑element sequencing and introduced the deNOVOEnrich pipeline to map somatic TE insertions in Arabidopsis thaliana, uncovering ~200,000 new events across wild‑type and epigenetic mutant lines. Somatic integration is non‑random and TE‑specific, with families like ONSEN, EVADE, and AtCOPIA21 preferentially targeting chromosomal arms, genic regions, and chromatin marked by H2A.Z, H3K27me3, and H3K4me1, especially near environmentally‑responsive genes such as resistance loci and biosynthetic clusters.
The study investigated whether wheat homoeologous genes actively compensate for each other when one copy acquires a premature termination codon (PTC) mutation. By analyzing mutagenised wheat lines, the authors found that only about 3% of cases exhibited upregulation of the unaffected homoeolog, indicating that widespread active transcriptional compensation is absent in wheat.
Overexpression of the wheat bHLH transcription factor TaPGS1 leads to increased flavonol accumulation in the seed coat, which disrupts polar auxin transport and causes localized auxin accumulation, delaying endosperm cellularization and increasing cell number, thereby enlarging grain size. Integrated metabolomic and transcriptomic analyses identified upregulated flavonol biosynthetic genes, revealing a regulatory module that links flavonol-mediated auxin distribution to seed development in wheat.
The study evaluated how alginate oligosaccharide (AOS) chain length influences the levels of seven key phytohormones in wheat seedlings challenged with Botrytis cinerea. Hormone profiling revealed that mid‑range oligomers (DP 4‑6) most strongly up‑regulate defense‑related hormones (JA, SA, ABA, CTK), whereas longer oligomers (DP 7) most effectively suppress ethylene. These findings suggest that tailoring AOS polymerization can optimize disease resistance and growth in cereal crops.
The study investigates the altered timing of the core circadian oscillator gene ELF3 in wheat compared to Arabidopsis, revealing that dawn-specific expression in wheat arises from repression by TOC1. An optimized computational model integrating experimental expression data and promoter architecture predicts that wheat’s circadian oscillator remains robust despite this shift, indicating flexibility in plant circadian network design.
The Global Wheat Full Semantic Organ Segmentation (GWFSS) dataset
Authors: Wang, Z., Zenkl, R., Greche, L., De Solan, B., Bernigaud Samatan, L., Ouahid, S., Visioni, A., Robles-Zazueta, C. A., Pinto, F., Perez-Olivera, I., Reynolds, M. P., Zhu, C., Liu, S., D'argaignon, M.-P., Lopez-Lozano, R., Weiss, M., Marzougui, A., Roth, L., Dandrifosse, S., Carlier, A., Dumont, B., Mercatoris, B., Fernandez, J., Chapman, S., Najafian, K., Stavness, I., Wang, H., Guo, W., Virlet, N., Hawkesford, M., Chen, Z., David, E., Gillet, J., Irfan, K., Comar, A., Hund, A.
The Global Wheat Dataset Consortium released a comprehensive semantic segmentation dataset (GWFSS) of wheat organs across developmental stages, comprising 1,096 fully annotated images and 52,078 unannotated images from 11 institutions. Models based on DeepLabV3Plus and Segformer were trained, with Segformer achieving ≈90% mIoU for leaves and spikes but lower precision (54%) for stems, while also enabling weed exclusion and discrimination of necrotic, senescent, and residue tissues.