A comparative physiological study of persimmon cultivars with flat (Hiratanenashi) and round (Koushimaru) fruit shapes revealed that differences in cell proliferation, cell shape, and size contribute to shape variation. Principal component analysis of elliptic Fourier descriptors tracked shape changes, while histology and transcriptome profiling identified candidate genes, including a WOX13 homeobox gene, potentially governing fruit shape development.

The study investigates the altered timing of the core circadian oscillator gene ELF3 in wheat compared to Arabidopsis, revealing that dawn-specific expression in wheat arises from repression by TOC1. An optimized computational model integrating experimental expression data and promoter architecture predicts that wheat’s circadian oscillator remains robust despite this shift, indicating flexibility in plant circadian network design.

The study investigated how Arabidopsis thaliana SR protein kinases (AtSRPKs) regulate alternative RNA splicing by using chemical inhibitors of SRPK activity. Inhibition with SPHINX31 and SRPIN340 caused reduced root growth and loss of root hairs, accompanied by widespread changes in splicing and phosphorylation of genes linked to root development and other cellular processes. Multi‑omics analysis (transcriptomics and phosphoproteomics) revealed that AtSRPKs modulate diverse splicing factors and affect the splicing landscape of numerous pathways.

The Global Wheat Dataset Consortium released a comprehensive semantic segmentation dataset (GWFSS) of wheat organs across developmental stages, comprising 1,096 fully annotated images and 52,078 unannotated images from 11 institutions. Models based on DeepLabV3Plus and Segformer were trained, with Segformer achieving ≈90% mIoU for leaves and spikes but lower precision (54%) for stems, while also enabling weed exclusion and discrimination of necrotic, senescent, and residue tissues.

The study investigates the role of the Arabidopsis transcription factor AtMYB93 in sulfur (S) signaling and root development, revealing that AtMYB93 mutants exhibit altered expression of S transport and metabolism genes and increased shoot S levels, while tomato plants overexpressing SlMYB93 show reduced shoot S. Transcriptomic profiling, elemental analysis, and promoter activity assays indicate that AtMYB93 contributes to root responses to S deprivation, though functional redundancy masks clear phenotypic effects on lateral and adventitious root formation.

The study investigates the Arabidopsis ribosomal protein RPS6A and its role in auxin‑related root growth, revealing that rps6a mutants display shortened primary roots, fewer lateral roots, and defective vasculature that are not rescued by exogenous auxin. Cell biological observations and global transcriptome profiling show weakened auxin signaling and reduced levels of PIN auxin transporters in the mutant, indicating a non‑canonical function of the ribosomal subunit in auxin pathways.

The study performed transcriptome profiling of Cryptomeria japonica individuals from different geographic origins grown in three common gardens across Japan, assembling 77,212 transcripts guided by the species' genome. Using SNP-based genetic clustering and weighted gene co‑expression network analysis, they identified gene modules whose expression correlated with genetic differentiation, revealing that defense‑related genes are up‑regulated in Pacific‑side populations while terpenoid metabolism genes are higher in Sea‑of‑Japan populations, indicating local adaptation via regulatory changes.

RNA‑seq of 328 wheat lines using a pan‑genome reference uncovered over 20,000 additional transcripts beyond the Chinese Spring genome and enabled construction of a pan‑gene eQTL regulatory atlas. Multi‑omics integration identified 231 high‑confidence candidate genes influencing 34 agronomic traits and powdery mildew resistance, with functional validation showing 80% of candidates affecting trait phenotypes via an EMS mutant library.

This review compiles experimental studies on wheat to assess how elevated CO₂, higher temperatures, and water deficit interact and affect productivity and water use. By calculating plasticity indices, the authors find that despite CO₂‑induced gains, overall yield generally declines under combined stress, while water consumption often decreases. They highlight the need for more data to improve and validate crop models under future climate scenarios.

The study introduces Transposase-Accessible Chromosome Conformation Capture (TAC-C), which combines ATAC‑seq and Hi‑C to map fine‑scale chromatin interactions in rice, sorghum, maize, and wheat, revealing genome‑size‑correlated loop structures and distinct C3 vs. C4 patterns. Integration with population genetics shows that loops link distal regulatory elements to phenotypic variation, and SPL transcription factors (TaSPL7/15) modulate photosynthesis‑related genes via these interactions, enhancing photosynthetic efficiency and starch content in wheat mutants.