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AI-summarized plant biology research papers from bioRxiv

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Quantitative manipulation of the photoperiodic flowering by a small-molecule clock modulator

Authors: Maeda, A. E., Ito, S., Oyama, T., Sato, A., Nakamichi, N., Muranaka, T.

Date: 2025-11-07 · Version: 1
DOI: 10.1101/2025.11.06.686944

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study investigates how a small molecule that lengthens circadian period can quantitatively adjust the critical day length required for flowering in monocot plants. By modulating the clock's timing, the researchers provide evidence supporting the external coincidence model of photoperiodic control.

photoperiodism circadian clock flowering time small molecule monocots

The potential to breed for genetic legacy effects in sustainable farming systems

Authors: Van Haeften, S., Brunner, S., Dinglasan, E., Fabreag, E., Eyre, J., Mens, C., Hayes, B. J., Udvardi, M., Alahmad, S., Eglinton, M., McQuinn, R., Ryan, M., van der Meer, S., Smith, M. R., Hickey, L.

Date: 2025-11-05 · Version: 1
DOI: 10.1101/2025.11.03.686422

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study tested the hypothesis that legacy effects of preceding mungbean genotypes on wheat performance are genetically controlled by evaluating 309 diverse mungbean lines followed by a single wheat cultivar in the same plots, finding wheat yield varied up to 1 t ha⁻¹ with moderate heritability (H² 0.43‑0.65). Integrated phenotypic, soil, and volatile organic compound analyses suggested root architecture, nitrogen fixation, and microbiome as drivers, and haplotype mapping identified mungbean genomic regions linked to wheat yield and protein. Simulated genomic selection with balanced weighting for both crops achieved simultaneous yield gains, demonstrating breeding potential for system‑level productivity.

legacy effects mungbean genotype wheat yield genomic selection legume‑cereal rotation

Temperate grasslands facing heatwaves: species diversity buffers effects on shoot growth but not on leaf parameters

Authors: Cera, A., Brunel-Muguet, S., Lemauviel-Lavenant, S.

Date: 2025-11-05 · Version: 1
DOI: 10.1101/2025.11.04.686479

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study evaluated whether plant species diversity buffers temperate grassland productivity and physiological performance under simulated heatwaves by comparing species mixtures to monocultures in a greenhouse. Severe heatwaves reduced biomass and leaf photosynthetic efficiency, while recurrent heatwaves caused cumulative negative effects, yet mixtures exhibited overyielding and enhanced resistance or recovery compared to monocultures. The findings indicate that diversity improves grassland resilience to heat stress, although leaf-level parameters alone do not fully capture this resilience.

heatwaves species diversity temperate grasslands overyielding Photosystem II efficiency

Decoupling of stomatal conductance from net assimilation at high temperature as a mechanism to increase transpiration

Authors: Schuler, P., Didion-Gency, M., Bortolami, G., Juillard, T., Hoch, G., Bachofen, C., Kahmen, A.

Date: 2025-11-04 · Version: 1
DOI: 10.1101/2025.11.03.686201

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study examined how rising air temperature and vapor pressure deficit (VPD) affect the coupling between net photosynthetic assimilation (Anet) and stomatal conductance (gs) in saplings of three temperate and tropical species. It found that at high temperatures (>35 °C) and low VPD, gs increased while Anet declined, leading to stomatal decoupling, whereas increasing VPD preserved the Anet‑gs coupling but caused decoupling of Anet and transpiration (E). These results suggest that stomatal decoupling is required to sustain transpiration when VPD is insufficiently high.

net photosynthetic assimilation stomatal conductance air temperature vapor pressure deficit stomatal decoupling

Eavesdropping roots: Fagus sylvatica detects belowground stress signals from conspecific and heterospecific (Picea abies) neighbors, triggering increased shoot VOC emissions

Authors: Meischner, M., Haberstroh, S., Kreuzwieser, J., Schnitzler, J.-P., Werner, C.

Date: 2025-10-31 · Version: 1
DOI: 10.1101/2025.10.30.685342

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study investigated belowground root‑root communication between Picea abies and Fagus sylvatica saplings using a split‑root system, where donor plants were treated with jasmonic acid and labeled with 13CO2 and 15NH4NO3. Jasmonic‑acid induction triggered distinct VOC emissions and led to detectable carbon exudation and nitrogen transfer to neighboring receiver plants, with stronger responses observed in heterospecific pairings, indicating species‑specific priming of defense.

volatile organic compounds belowground signaling jasmonic acid isotopic labeling inter‑species root interactions

Leaf traits in Phaseolus vulgaris and Phaseolus acutifolius reveal divergent terminal drought coping strategies

Authors: Salazar-Chavarria, A. V., Zavala-Padilla, G. T., Lechuga-Jimenez, A., Palomar, V. M., Acosta-Maspons, A., Covarrubias, A. A.

Date: 2025-10-29 · Version: 1
DOI: 10.1101/2025.10.28.685217

Category: Plant Biology

Model Organism: Multi-species

AI Summary

This study compares anatomical, physiological and transcriptomic leaf responses to terminal drought in drought‑resistant genotypes of common bean (Phaseolus vulgaris) and tepary bean (Phaseolus acutifolius). Tepary bean leaves displayed longer major veins, larger xylem area, increased intercellular air space and thicker cuticles, which correlated with higher photosynthetic rates, greater carbon assimilation and distinct gene expression patterns relative to common bean. The findings identify leaf‑level traits that could be targeted to improve drought resilience in common bean.

terminal drought leaf anatomy Phaseolus vulgaris Phaseolus acutifolius photosynthetic performance

ALGAL HOMOLOGS OF THE PLANT CER1 AND CER3 PROTEINS ARE FUNCTIONAL HYDROCARBON-FORMING ENZYMES

Authors: Baca-Porcel, A., Legeret, B., Cabanel, M., Le-Cossec, M., Sorigue, D., Li-Beisson, Y., Veillet, F., Beisson, F.

Date: 2025-10-29 · Version: 1
DOI: 10.1101/2025.10.28.685152

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study functionally characterizes CER1/3 proteins from green algae by expressing them in yeast, showing they can independently synthesize hydrocarbons and that conserved motif mutations impair this activity. Co‑expression of plant CER3 with algal CER1/3 in yeast leads to production of longer alkanes, supporting an evolutionary model where the plant CER1/CER3 complex arose from a bifunctional algal ancestor through gene duplication and specialization.

very-long-chain alkanes CER1/3 bifunctional enzyme green algae heterologous yeast expression alkane biosynthesis

Taxonomic notes on New Zealand orchids II: typification of Nematoceras trilobus Hook.f. and the names of four Thelymitra species described by William Colenso.

Authors: Jones, H. R., Lehnebach, C. A.

Date: 2025-10-27 · Version: 1
DOI: 10.1101/2025.10.21.683774

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The paper designates lectotypes for five New Zealand orchid species originally described by Hooker and Colenso, confirming the basionym of Corybas trilobus and clarifying taxonomy of several Thelymitra species. It also reports the discovery of the holotype of Thelymitra concinna and proposes synonymising T. decora with T. nervosa.

Orchidaceae lectotype designation holotype discovery taxonomic synonymy New Zealand

Hyperspectral Imaging to Quantify Nodules and Detect Biological Nitrogen Fixation in Legumes

Authors: Wang, Y., de Silva, K., Song, D., Kamruzzaman, M., Brooks, M. D.

Date: 2025-10-24 · Version: 3
DOI: 10.1101/2025.07.25.666867

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study demonstrates that hyperspectral imaging can non‑destructively differentiate active nitrogen‑fixing root nodules from non‑fixing nodules and root tissue based on distinct spectral signatures. By integrating deep‑learning models, the authors created an automated nodule counting pipeline that works across multiple legume species and growth conditions, eliminating labor‑intensive manual counting and reliably detecting nodules within dense root systems.

root nodules biological nitrogen fixation hyperspectral imaging deep learning legume species

Cover crop microbiomes affect legume cash crop growth but not consistently through enriching nitrogen-fixing rhizobia

Authors: Clouse, K., Paillan, E., Depew, C., Harris, J., Jason, A., Mercurio, K., Swartley, A., Bingham, E., Burghardt, L.

Date: 2025-10-24 · Version: 1
DOI: 10.1101/2025.10.23.684197

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study examined whether legume cover crops can be used to enrich rhizobial bacteria that enhance nodulation and nitrogen fixation in subsequent legume cash crops. In a greenhouse experiment, cash crops were inoculated with rhizosphere and nodule microbiomes from different cover crops, revealing distinct bacterial communities and strong host selectivity, while cover crop identity significantly affected nodule formation and plant biomass, especially for alfalfa and soybean where higher rhizobial abundance increased performance. These results highlight the importance of selecting cover crops that promote effective microbial partners for sustainable legume systems.

plant-microbe interactions rhizobial inoculants legume cover crops nodulation greenhouse experiment
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