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AI-summarized plant biology research papers from bioRxiv

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Latest 17 Papers

LIKE EARLY STARVATION is involved in the regulation of starch initiation in potato (Solanum tuberosum cv. Desiree) tubers

Authors: Locquet, C., Berti, M., Bray, F., Hulin, H., Stoclet, G., Seung, D., Lourdin, D., D'Hulst, C., Wattebled, F., Szydlowski, N.

Date: 2025-06-24 · Version: 1
DOI: 10.1101/2025.06.23.661224

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

CRISPR/Cas9-mediated knock‑out of the starch‑binding protein LESV in Solanum tuberosum resulted in severely reduced starch granule diameter and altered granule number, mimicking phenotypes of ISA1/ISA2 antisense lines. Yeast two‑hybrid assays confirmed a physical interaction between LESV and ISA1, supporting a cooperative role of LESV with the ISA1/ISA2 isoamylase complex in early starch granule formation, while ESV1 mutants showed no starch phenotype.

starch initiation LESV ISA1/ISA2 isoamylase complex CRISPR/Cas9 knockout yeast two-hybrid

Pseudomonas syringae pv. tomato and the fall armyworm modulate the morpho-physiology and the metabolome of potato plants

Authors: Maluleke, S., Ogugua, U. V., Madala, N. E., Sibisi, P., Mazibuko, M. P., Nofemela, S. R., Udeh, E. L., Ntushelo, K.

Date: 2025-04-24 · Version: 1
DOI: 10.1101/2025.04.23.650202

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

Potato seedlings were subjected to fall armyworm, Pseudomonas syringae pv. tomato, or both, revealing that the bacterium mitigates the insect's impact on plant height and alters physiological traits such as stomatal conductance, transpiration efficiency, and water use efficiency. Comprehensive correlation analyses and leaf metabolomic profiling showed distinct morpho‑physiological and metabolic responses, with evidence of interaction and possible deterrence of the pest by the bacterium.

Solanum tuberosum fall armyworm Pseudomonas syringae pv. tomato morpho‑physiological response metabolomic changes

An ERF transcription factor StPTI5, a novel regulator of endophyte community maintenance in potato

Authors: Lukan, T., Kraigher, B., Pogacar, K., Stare, K., Grubar Kovacic, T., Zagorscak, M., Petek, M., Stefanic, P., Vozelj, A., Levak, V., Mahkovec Povalej, T., Garcia, J. M., Pozo, M. J., Mandic-Mulec, I., Gruden, K.

Date: 2025-04-24 · Version: 1
DOI: 10.1101/2025.04.24.650297

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

The study shows that the ERF transcription factor PTI5, previously identified as a susceptibility factor, is strongly induced during Bacillus subtilis biofilm establishment on potato roots and modulates ethylene‑dependent immune signaling. Silencing PTI5 enhances bacterial abundance and increases colonization by the arbuscular mycorrhizal fungus Rhizophagus irregularis, indicating PTI5 restricts both pathogenic and beneficial microbial interactions. These findings provide mechanistic insight for managing beneficial plant‑microbe relationships in crops.

PTI5 ethylene signaling plant immunity beneficial microbes Solanum tuberosum

High resolution diel transcriptomes of autotetraploid potato reveal expression and sequence conservation among rhythmic genes

Authors: Feke, A., Vaillancourt, B., Acheson, K., Brose, J., Hamilton, J. P., Martin, D., Wang, Y.-W., Wood, J. C., Buell, C. R., Farre, E. M.

Date: 2025-04-24 · Version: 1
DOI: 10.1101/2025.04.22.650056

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

The study characterized the diel transcriptome of cultivated tetraploid potato, revealing that cyclic alleles are more highly expressed, co‑expressed across conditions, and exhibit stronger purifying selection than non‑cyclic alleles. Genes with fully rhythmic expression are enriched for core functions such as photosynthesis and ribosome biogenesis, and photoperiod‑dependent phase shifts in ribosome biogenesis and pathogen response genes are linked to specific transcription factors. The findings also suggest additional regulatory mechanisms beyond CO transcription enable tuberization under long days.

photoperiodic regulation diel transcriptome cyclic gene expression tetraploid potato allelic diversity

Relationship Between Open Reading Frame 320, a Gene Causing Male Sterility in Tomatoes, and Cytoplasmic Male Sterility in Potatoes

Authors: Nakajima, R., Sanetomo, R., Shirasawa, K., Ariizumi, T., Kuwabara, K.

Date: 2025-04-18 · Version: 1
DOI: 10.1101/2025.04.17.649265

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

The study identified a novel mitochondrial open reading frame, orf320, uniquely present in potatoes with the T/β-type cytoplasm and demonstrated that its overexpression in tomato induces male sterility, confirming its role as a candidate CMS gene. Screening of 126 potato cultivars showed orf320 is absent in other cytoplasmic types, highlighting its potential utility for managing CMS in potato breeding.

cytoplasmic male sterility orf320 mitochondrial genome T/β-type cytoplasm potato breeding

Iron and zinc biofortification in potato through the introduction of NICOTIANAMINE SYNTHASE and FERRITIN genes

Authors: Cortelezzi, J. I., Zubillaga, M., Scardino, V. R., Fumagalli, M., Muniz Garcia, M. N., Capiati, D. A.

Date: 2025-03-07 · Version: 1
DOI: 10.1101/2025.03.01.640813

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

The study engineered a Spunta potato variety (Solanum tuberosum) by co‑expressing Arabidopsis thaliana NICOTIANAMINE SYNTHASE 1 (AtNAS1) and Phaseolus vulgaris FERRITIN (PvFERRITIN) to increase tuber iron and zinc levels. The best transgenic line, FN4, showed a 2.1‑fold increase in iron and a 1.8‑fold increase in zinc without compromising yield, delivering up to 33.3% of the recommended dietary allowance for iron and 19.8% for zinc in a typical serving.

biofortification iron and zinc enrichment Solanum tuberosum NICOTIANAMINE SYNTHASE FERRITIN

Potato Late Blight Control with a Botanical Product and Reduced Copper Applications

Authors: Musa, T., Kagi, A., Gutlin, H., Schnee, S., Massana-Codina, J., Sullam, K. E.

Date: 2025-03-03 · Version: 2
DOI: 10.1101/2025.01.08.627882

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

The study evaluated Frangula alnus bark extracts, alone and combined with reduced copper, for controlling potato late blight caused by Phytophthora infestans in field and laboratory experiments. Frangula alnus decreased disease severity, with efficacy dependent on dosage and disease pressure, and anthraquinones likely contributed to the effect, while Erwinia spp. from the extract mediated most in‑vitro inhibition but not in‑planta activity. Copper, whether full or reduced, consistently reduced disease, and potato variety had a stronger influence on yield than the treatments.

potato late blight Frangula alnus bark copper reduction anthraquinones Erwinia spp.
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