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Untargeted metabolomics reveals key metabolites and genes underlying salinity tolerance mechanisms in maize

Authors: Brar, M. S., De Souza, A., Ghai, A., Ferreira, J. F. S., Sandhu, D., Sekhon, R.

Date: 2025-04-14 · Version: 1
DOI: 10.1101/2025.04.08.647850

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study compared physiological, ion‑balance, and metabolic responses of two maize inbred lines—salt‑sensitive C68 and salt‑tolerant NC326—under salinity stress. Untargeted metabolomics identified 56 metabolites and, together with genetic analysis, linked 10 candidate genes to key protective metabolites, revealing constitutive and inducible mechanisms of salt tolerance.

salt tolerance maize untargeted metabolomics flavonoids candidate genes

A reaction norm for flowering time plasticity reveals physiological footprints of maize adaptation

Authors: Drouault, J., Palaffre, C., Millet, E. J., Rodriguez, J., Martre, P., Johnson, K., Parent, B., Welcker, C., Wisser, R. J.

Date: 2025-04-10 · Version: 4
DOI: 10.1101/2024.07.10.602692

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study models maize flowering time plasticity using a physiological reaction norm derived from multi-environment trial data, revealing genotype-specific differences in temperature-driven development and photoperiod perception. It introduces an envirotyping metric that shows genotypes can experience markedly different photoperiods even within the same environment, and demonstrates distinct adaptive strategies between tropical and temperate germplasm.

flowering time genotype-by-environment interaction photoperiod perception plasticity maize

High Density Phenotypic Map of Natural Variation for Intermediate Phenotypes Associated with Stalk Lodging Resistance in Maize

Authors: Kunduru, B., Bokros, N. T., Tabaracci, K., Kumar, R., Brar, M. S., Stubbs, C. J., Oduntan, Y., DeKold, J., Bishop, R. H., Woomer, J., Verges, V. L., McDonald, A., McMahan, C. S., DeBolt, S., Robertson, D. J., Sekhon, R.

Date: 2025-04-06 · Version: 1
DOI: 10.1101/2025.04.03.647088

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study evaluated 11 intermediate phenotypes linked to stalk lodging resistance in a diverse panel of 566 maize (Zea mays L.) inbred lines across four environments, preserving individual stalk identity to capture plant-level variation. This high-density phenotypic dataset enabled statistical genomics, predictive modeling, and machine learning to uncover genetic factors underlying lodging resistance, offering insights applicable to other grass species.

stalk lodging resistance maize phenomics genetic architecture intermediate phenotypes machine learning

Volatiles from low R:FR-treated maize plants increase the emission of herbivore-induced plant volatiles in their neighbors

Authors: Escobar Bravo, R., Schimmel, B. C. J., Erb, M.

Date: 2025-04-02 · Version: 2
DOI: 10.1101/2024.10.05.616768

Category: Plant Biology

Model Organism: Zea mays

AI Summary

Low red to far‑red (R:FR) light ratios increase the priming of herbivore‑induced volatile emissions in maize plants that have been exposed to neighbor volatiles, regardless of the light conditions of the emitting plants. Both constitutive VOCs and HIPVs released by maize grown under low R:FR amplify HIPV emission in neighboring receivers, indicating that canopy shade can intensify volatile‑mediated plant‑plant communication.

low R:FR light Zea mays herbivore‑induced plant volatiles volatile priming plant‑plant communication

Archaeological Bolivian maize genomes suggest Inca cultural expansion augmented maize diversity in South America

Authors: Chen, H., Baetsen-Young, A., Thompson, A., Day, B., Madzima, T., Wasef, S., Rivera Casanovas, C., Lovis, W., Wrobel, G.

Date: 2025-04-01 · Version: 1
DOI: 10.1101/2025.03.31.646424

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study analyzes ancient maize genomes from a 500–600 BP Bolivian offering and compares them with 16 archaeological samples spanning 5,000 years and 226 modern Zea mays lines, revealing close genetic affinity to ancient Peruvian maize and increased diversity during Inca‑local interactions. Phylogenetic and phenotypic analyses of ovule development indicate targeted breeding for seed quality and yield, suggesting culturally driven selection was already established by the 15th century CE.

ancient maize biocultural selection Inca agriculture phylogenetic analysis seed traits

High-resolution transcriptional atlas of growing maize shoot organs throughout plant development under well-watered and drought conditions

Authors: Zhang, J., Verbraeken, L., Sprenger, H., Mertens, S., Wuyts, N., Cannoot, B., De Block, J., Demuynck, K., Natran, A., Maleux, K., Merchie, J., Crafts-Brandner, S., Vogel, J., Bruce, W., Inze, D., Maere, S., Nelissen, H.

Date: 2025-03-13 · Version: 1
DOI: 10.1101/2025.03.12.642568

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study mapped the macroscopic and cellular development of maize leaves and internodes, revealing a shared growth design with organ‑specific timing. Using high‑resolution spatiotemporal transcriptome profiling of 272 tissue samples under well‑watered and drought conditions, the authors generated a searchable expression atlas and identified conserved and organ‑specific gene regulatory patterns, including genes linked to leaf angle and vascular development. This resource advances understanding of shoot organ development and drought response for targeted trait engineering in maize.

Zea mays leaf and internode development drought stress spatiotemporal transcriptome atlas gene regulatory networks

Temporal analysis of physiological phenotypes identifies novel metabolic and genetic underpinnings of senescence in maize

Authors: Brar, M. S., Kumar, R., Kunduru, B., McMahan, C. S., Tharayil, N., Sekhon, R. S.

Date: 2025-03-12 · Version: 1
DOI: 10.1101/2025.03.07.641920

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study generated a temporal physiological and metabolomic map of leaf senescence in diverse maize inbred lines differing in stay‑green phenotype, identifying 84 metabolites associated with senescence and distinct metabolic signatures between stay‑green and non‑stay‑green lines. Integration of metabolite data with genomic information uncovered 56 candidate genes, and reverse‑genetic validation in maize and Arabidopsis demonstrated conserved roles for phenylpropanoids such as naringenin chalcone and eriodictyol in regulating senescence.

leaf senescence staygreen metabolomics phenylpropanoids maize

Targeting Enhanced Digestibility: Prioritizing Low Pith Lignification to Complement low p-Coumaric Acid content as environmental stress intensity increase

Authors: Main, O., Lopez-Malvar, A., Meunier, F., Guillaume, S., Jacquemot, M.-P., Lopez-Marnet, P.-L., Barotin, C., Marmagne, A., Cezard, L., Fargier, S., Rey, S., Larsonneau, P., Mangel, N., Uijttewaal, A., Reymond, M., Coursol, S., Mechin, V.

Date: 2025-03-11 · Version: 2
DOI: 10.1101/2024.04.12.589230

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study examined how water and heat stress affect digestibility in modern forage maize hybrids by growing them under four controlled stress regimes over two years and performing agronomic, biochemical, and histological analyses. Severe stress reduced ear production but maintained dry matter digestibility through increased cell wall digestibility, linked to lowered p‑hydroxycinnamic acid and altered lignin distribution without changes in overall lignin content. The findings suggest breeding programs should incorporate moderate stress conditions to enhance forage quality under climate change.

forage maize drought and heat stress cell wall digestibility p-hydroxycinnamic acid lignin distribution

A biphasic trajectory for maize stalk mechanics shaped by internal and external factors

Authors: Ikiriko, I. I., Hostetler, A. N., Reneau, J. W., Betts, A. K., Sparks, E. E.

Date: 2025-03-07 · Version: 1
DOI: 10.1101/2025.03.03.641235

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study quantified flexural stiffness of Zea mays stalks in inbred and hybrid genotypes across environments and disease conditions, revealing a biphasic mechanical trajectory consisting of a linear increase followed by a sustained phase. While environmental or biotic factors altered the rate of the linear phase within genotypes, the timing of phase transition varied among genotypes and was governed by the bending modulus rather than stalk geometry. These findings provide a mechanistic basis for breeding strategies aimed at optimizing stalk resilience.

maize stalk mechanics flexural stiffness biphasic trajectory bending modulus disease stress

Fiber Bragg grating based sensing system for non-destructive root phenotyping using ResNet prediction

Authors: Binder, S., Hossain, K., Bucksch, A., Fok, M.

Date: 2025-02-28 · Version: 2
DOI: 10.1101/2024.09.17.613457

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study introduces an in-soil fiber Bragg grating (FBG) sensing system that continuously records three-dimensional strain from growing pseudo-roots, enabling non‑destructive monitoring of root architecture. Using two ResNet models, the system predicts root width and depth with over 90% accuracy, and performance improves to 96‑98% after retraining on data from actual corn (Zea mays) roots over a 30‑day period. This prototype demonstrates potential for scalable, real‑time root phenotyping and broader soil environment sensing.

root architecture fiber Bragg grating real-time phenotyping deep learning Zea mays
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