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AI-summarized plant biology research papers from bioRxiv

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Plant Kelch phosphatases are Ser/Thr phosphatases involved in cell cycle regulation

Authors: Rico-Resendiz, F., Pri-Tal, O., Raia, P., Moretti, A., Chen, H., Yu, J., Broger, L., Fuchs, C., Hothorn, L. A., Loubery, S., Hothorn, M.

Date: 2026-01-06 · Version: 1
DOI: 10.64898/2026.01.06.697939

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that the Kelch phosphatase BSU1, previously thought to act as a tyrosine phosphatase in brassinosteroid signaling, actually functions as a PP1-like serine/threonine phosphatase whose activity is inhibited by CDK-mediated phosphorylation of its C‑terminal tail. Structural analysis, mutagenesis, and genetic experiments in Arabidopsis and Marchantia demonstrate that this regulatory mechanism links BSU1 to cell‑cycle control, affecting stomatal patterning, fertility, and undifferentiated cell mass formation.

brassinosteroid signaling BSU1 phosphatase PP1-like regulation cell cycle control Arabidopsis thaliana

A Endophytic Fungal Diversity in Medicinal Plants of Kenya: Azadirachta indica A. Juss and Melia azedarach L.

Authors: Osano, A., Dill, R., Okoth, S., Arnold, E., Lee, M.-m., Chery, V., Amakhobe, T., Oballa, G., Egami, H., Aran, P., Bauer, E., Maro, C., Oyekanmi, J.

Date: 2026-01-06 · Version: 1
DOI: 10.64898/2026.01.05.697769

Category: Plant Biology

Model Organism: Azadirachta indica and Melia azedarach

AI Summary

The study isolated and identified endophytic fungi from various tissues of the medicinal plants Azadirachta indica (neem) and Melia azedarach (melia) in Kenya, recovering 95 fungi from neem and 46 from melia, with a predominance of ascomycetes such as Phomopsis, Penicillium, Colletotrichum, and Preussia. Leaf tissues yielded the highest fungal richness, especially in neem, and geographic variation in dominant species was observed, highlighting the potential of these endophytes as sources of bioactive secondary metabolites.

endophytic fungi Azadirachta indica Melia azedarach fungal diversity secondary metabolites

Microneedle-based precision payload delivery in plants

Authors: Li, M., Poonam, A. D., Singh, D., Xu, J., Jing, H., Zuo, Z., Huang, Y., Liu, N., Liu, Y., Gao, L., Xia, T., Whitfield, A. E., Wei, Q.

Date: 2026-01-06 · Version: 3
DOI: 10.1101/2025.06.04.657704

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study presents a polyvinyl alcohol‑based microneedle (MN) platform for precise, low‑dose delivery of small molecules to plant tissues, achieving up to 3.5‑fold higher accumulation than conventional sprays. Demonstrations include fluorescent dye diffusion in tomato stems, gibberellic acid‑induced growth enhancement in tomato and phenotypic rescue of Arabidopsis ft‑10 mutants, and salicylic acid‑mediated resistance to tomato spotted wilt virus in Nicotiana benthamiana, all with minimal wounding stress.

microneedle delivery polyvinyl alcohol plant molecular delivery gibberellic acid salicylic acid resistance

Fendioxypyracil, a new and systemic PPO-inhibiting herbicide for X-spectrum weed control

Authors: Seiser, T., Porri, A., Johnen, P., Zeyer, S., Wahrheit, J., Betz, M., Vandenberghe, B., Asher, S., Parra, L.

Date: 2026-01-05 · Version: 1
DOI: 10.64898/2026.01.05.697680

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Fendioxypyracil is a new PPO‑inhibiting herbicide that exhibits potent post‑emergence control of several major grass and broadleaf weeds, with lower IC values than the standard saflufenacil. Greenhouse studies confirmed its broad‑spectrum efficacy and enzyme assays verified PPO as its primary target, highlighting its potential for integrated weed management and resistance mitigation.

PPO inhibitor fendioxypyracil herbicide resistance weed control protoporphyrinogen oxidase

WITHDRAWN: Genomic characterization of heat related QTLs of wheat using SNPs

Authors: Abid, A., Awan, F. S.

Date: 2026-01-05 · Version: 2
DOI: 10.1101/2025.07.03.662513

Category: Plant Biology

Model Organism: General

AI Summary

The authors have withdrawn their manuscript, indicating that substantial revisions are needed and requesting that the work not be cited.

withdrawal manuscript revision citation request retraction

Rapid sensing and relaying of cellular hyperosmotic-stress signals via RAF-SnRK2 core condensates

Authors: Liu, G., Lin, Z., Lin, G., Wang, X., Liu, X., Lang, Z., Zhu, J.-K., Wang, P.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.03.697504

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that Arabidopsis B4‑subgroup RAF kinases contain intrinsically disordered regions that act as direct osmosensors, condensing reversibly in response to ionic and non‑ionic hyperosmolarity. These condensates recruit subclass‑I SnRK2 kinases, enabling their activation while bypassing inhibition by A‑clade PP2C phosphatases, and the entire module can be reconstituted in E. coli or in vitro with recombinant proteins.

hyperosmolarity B4‑RAF kinases SnRK2 activation protein condensation osmotic sensing

Combating citrus greening disease by simultaneously targeting the pathogen and callose-mediated phloem occlusion

Authors: Khalilzadeh, M., Lin, C.-Y., Chater, J. M., Levy, A., Vincent, C.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.03.697484

Category: Plant Biology

Model Organism: Citrus

AI Summary

The study tested combined antibiotic and callose inhibitor treatments to restore phloem function and improve carbon allocation in HLB‑affected citrus. While the callose inhibitor alone boosted short‑term sugar transport and the antibiotic alone increased fruit carbon import, only the combined treatment consistently reduced callose blockage, enhanced phloem conductivity, lowered fruit abscission, and raised total fruit carbon after drop. These results indicate that targeting both pathogen load and host callose accumulation is needed to rebalance source‑sink dynamics and boost orchard productivity.

Huanglongbing Candidatus Liberibacter asiaticus callose deposition phloem conductivity integrated antibiotic and callose inhibitor treatment

Southern South American Maize Landraces: A Source of Phenotypic Diversity

Authors: Dudzien, T. L., Freilij, D., Defacio, R. A., Fernandez, M., Paniego, N. B., Lia, V. V., Dominguez, P. G.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.02.697242

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study assessed 17 morphological, biochemical, and salt‑stress tolerance traits in 19 maize (Zea mays) landrace accessions from northern Argentina, revealing substantial variation both within and among accessions. Redundancy analysis linked phenotypic variation to the altitude of the collection sites, underscoring the potential of these landraces as sources of diverse biochemical and stress‑related traits for breeding.

Zea mays maize landraces phenotypic diversity biochemical traits salt stress tolerance

A chloroplast-localized protein AT4G33780 regulates Arabidopsis development and stress-associated responses

Authors: Yang, Z.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.03.697459

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the chloroplast‑localized protein AT4G33780 in Arabidopsis thaliana using CRISPR/Cas9 knockout and overexpression lines, revealing tissue‑specific expression and context‑dependent effects on seed germination, seedling growth, vegetative development, and root responses to nickel stress. Integrated transcriptomic (RNA‑seq) and untargeted metabolomic analyses show extensive transcriptional reprogramming—especially of cell‑wall genes—and altered central energy metabolism, indicating AT4G33780 coordinates metabolic state with developmental regulation rather than controlling single pathways.

AT4G33780 chloroplast regulator Arabidopsis thaliana transcriptomics metabolomics

Root-Suppressed Phenotype of Tomato Rs Mutant is Seemingly Related to Expression of Root-Meristem-Specific Sulfotransferases

Authors: Kumari, A., Gupta, P., Santisree, P., Pamei, I., Valluri,, S., Sharma, K., Venkateswara Rao, K., Shukla, S., Nama, S., Sreelakshmi, Y., Sharma, R.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.03.697460

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study characterizes a radiation‑induced root‑suppressed (Rs) mutant in tomato that displays dwarfism and pleiotropic defects in leaves, flowers, and fruits. Metabolite profiling and rescue with H2S donors implicate disrupted sulfur metabolism, and whole‑genome sequencing identifies promoter mutations in two root‑meristem‑specific sulfotransferase genes as likely contributors to the root phenotype.

root development sulfur metabolism sulfotransferase radiation‑induced mutant tomato
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