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AI-summarized plant biology research papers from bioRxiv

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Latest 10 Papers

A Savory-based Formulation for Sustainable Management of Early Blight caused by Alternaria solani and Preservation of Tomato Fruit Quality

Authors: Lak, F., Omrani, A., Nikkhah, M. J., Gohari, A. M., Nicolaisen, M., Abuali, M., Ahmadzadeh, M.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.20.700539

Category: Plant Biology

AI Summary

The study assessed three savory essential‑oil formulations for controlling early blight caused by Alternaria solani in tomato, finding that formulation CC2020 most effectively reduced disease severity in vitro and in greenhouse trials. CC2020 also helped maintain fruit vitamin C levels and lowered fungal melanin production, indicating dual benefits for disease management and fruit quality.

early blight Alternaria solani savory essential oil Tomato (Solanum lycopersicum) biocontrol

Comprehensive characterisation of IAA inactivation pathways reveals the impact of glycosylation on auxin metabolism and plant development

Authors: Casanova-Saez, R., Pencik, A., Brunoni, F., Ament, A., Hladik, P., Zukauskaitee, A., Simura, J., Novak, O., Voss, U., Bennett, M. J., Ljung, K., Mateo Bonmati, E.

Date: 2026-01-21 · Version: 1
DOI: 10.64898/2026.01.19.700167

Category: Plant Biology

AI Summary

The authors created combinatorial mutants of group II GH3s, DAO1/DAO2, and key UGTs to dissect indole‑3‑acetic acid (IAA) inactivation pathways, using ^13C6‑IAA feeding to trace metabolic flux. Their results show that DAO enzymes act downstream of GH3s and that UGT‑mediated IAA glycosylation plays a larger role in regulating IAA levels and development than previously recognized, while residual GH3 activity and unidentified pathways may contribute to phenotypes such as early flowering via FLC down‑regulation.

IAA inactivation DAO1/DAO2 GH3 amido synthetases UDP‑glycosyltransferases Arabidopsis thaliana

Precursor-Dependent Routing of Aromatic Amino Acids Determines Lignin Structure in Grasses by Sensitivity-Enhanced Solid-State NMR

Authors: Sahu, P., Debnath, D., Xiao, P., Gunaga, S. S., Scott, F. J., Bentelspacher, M., Xu, Y., Mentink-Vigier, F., Barros, J., Wang, T.

Date: 2026-01-21 · Version: 1
DOI: 10.64898/2026.01.17.700116

Category: Plant Biology

AI Summary

Using 13C‑isotope labeling combined with DNP‑enhanced solid‑state NMR, the study directly tracked phenylalanine‑ and tyrosine‑derived carbon incorporation into lignin in Brachypodium distachyon. Phenylalanine predominates in canonical guaiacyl and syringyl lignins, whereas tyrosine enriches hydroxyphenyl lignin and hydroxycinnamates, and loss of p‑coumarate 3‑hydroxylase impairs phenylalanine‑derived lignification while tyrosine‑derived lignin persists, revealing a precursor‑specific compensatory pathway. These findings highlight precursor‑dependent control of lignin composition and validate the methodological framework for dissecting lignin biosynthesis.

lignin biosynthesis 13C isotope labeling solid-state NMR Brachypodium distachyon phenylalanine vs tyrosine

Host-Botrytis co-transcriptomics reveals finely tuned interactions with closely related legumes

Authors: Muhich, A. J., Singh, R., Tom, C., Caseys, C., Srinivas, K., Faieta, L., Grabbe, B., Kliebenstein, D.

Date: 2026-01-21 · Version: 1
DOI: 10.64898/2026.01.20.700702

Category: Plant Biology

AI Summary

Using a co‑transcriptomic approach, the study examined interactions between the generalist necrotroph Botrytis cinerea and two closely related legumes, common bean (Phaseolus vulgaris) and cowpea (Vigna unguiculata), across 72 pathogen isolates. While lesion development was mainly driven by pathogen genetic variation, both host and pathogen displayed extensive host‑by‑isolate transcriptional plasticity, with host‑specific expression of cell‑wall modifying enzymes and divergent co‑expression networks. The findings reveal that pervasive gene‑expression flexibility in both partners enables similar disease outcomes despite divergent molecular responses.

Botrytis cinerea Phaseolus vulgaris Vigna unguiculata co‑transcriptomics transcriptional plasticity

Reconstructing coniferous tree crown shape from incomplete point clouds using deep learning

Authors: Bornand, A., Abegg, M., Morsdorf, F., Puliti, S., Astrup, R., Rehush, N.

Date: 2026-01-21 · Version: 1
DOI: 10.64898/2026.01.18.700158

Category: Plant Biology

AI Summary

The study introduces a deep learning geometry-aware transformer (AdaPoinTr) that reconstructs the outer crown shape of coniferous trees from incomplete terrestrial or mobile laser‑scanned point clouds by predicting the crown's alpha‑shape. Trained on synthetic partial crowns, the model improves crown shape similarity and reduces tree height estimation bias across diverse forest datasets, offering a practical solution for accurate 3D forest metrics from limited data.

deep learning point cloud completion conifer crown reconstruction alpha‑shape forest structure

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2
DOI: 10.64898/2025.12.16.694548

Category: Plant Biology

AI Summary

This study investigates the gene regulatory network (GRN) governing flowering time in the allotetraploid crop Brassica napus using comparative transcriptomics with Arabidopsis thaliana. While most orthologous gene pairs show conserved expression dynamics, several flowering‑time genes, including SOC1 paralogues, exhibit regulatory divergence, especially under cold stress, indicating subfunctionalisation. The overall network topology remains similar to Arabidopsis, reflecting retention of paralogues that preserve regulatory structure.

flowering time gene regulatory network Brassica napus comparative transcriptomics SOC1 subfunctionalisation

Two-step polar plastid migration via F-actin and microtubules ensures unequal inheritance during asymmetric division of Arabidopsis zygote

Authors: Tada, K., Matsumoto, H., Oi, T., Kang, Z., Nonoyama, T., Tsugawa, S., Kimata, Y., Kusano, S., Hagihara, S., Ichikawa, S., Kodama, Y., Ueda, M.

Date: 2026-01-20 · Version: 1
DOI: 10.64898/2026.01.19.697633

Category: Plant Biology

AI Summary

Using quantitative live‑cell imaging in Arabidopsis thaliana zygotes, the authors show that plastids migrate apically in two stages: initially together with the nucleus along F‑actin, then via microtubule‑driven movement after nuclear migration slows, resulting in unequal plastid inheritance. Plastid migration is independent of starch but requires a fertilization‑activated MAP kinase pathway, revealing a spatiotemporal regulatory mechanism at the onset of plant development.

plastid migration Arabidopsis thaliana actin filaments microtubules MAP kinase pathway

Beyond Peak Wavelength: Spectral Bandwidth of Blue and Red-Blue Laser Diodes (LDs) Reprograms Photosynthesis, Canopy Architecture, Senescence, and Whole-Plant Growth

Authors: Li, L., Sugita, R., Togawa, H., Terashima, I., Yamori, W.

Date: 2026-01-20 · Version: 1
DOI: 10.64898/2026.01.18.700227

Category: Plant Biology

AI Summary

The study used narrow‑band laser diode lighting versus broad‑band LEDs to test how spectral bandwidth, independent of peak wavelength, affects photosynthesis, canopy architecture, leaf senescence, and growth in tobacco, lettuce, and Arabidopsis. Narrow‑band blue light reduced assimilation and biomass but produced more upright canopies and delayed lower‑leaf senescence, while combined narrow‑band red + blue light improved photosynthetic performance and yielded higher fresh weight and healthier physiology than broad‑band light. These results show that controlling bandwidth can decouple traditional sun‑shade leaf traits and optimize indoor horticultural productivity.

spectral bandwidth laser diode lighting leaf senescence canopy architecture indoor horticulture

Fungal volatiles drive lifestyle-dependent, systemic metabolic reprogramming in poplar

Authors: Zhu, P., Zimmer, I., Sivaprakasam Padmanaban, P. B., Rosenkranz, M., Ghirardo, A., Schnitzler, J.-P.

Date: 2026-01-20 · Version: 1
DOI: 10.64898/2026.01.19.700287

Category: Plant Biology

AI Summary

The study shows that volatile organic compounds emitted by different fungi can independently trigger distinct systemic metabolic responses in Populus x canescens roots and leaves, even without physical contact. Pathogen, saprotroph, and ectomycorrhizal fungal VOCs each induced characteristic metabolic reprogramming, indicating that trees can preemptively adjust physiology based on fungal lifestyle cues.

volatile organic compounds fungal VOCs systemic metabolism Populus metabolomics fungal lifestyle

Lhcf2 in the peripheral antenna is essential for non-photochemical quenching and Lhcx1 accumulation in the diatom Chaetoceros gracilis

Authors: Xing, J., Kumazawa, M., Ifuku, K.

Date: 2026-01-20 · Version: 1
DOI: 10.64898/2026.01.17.700047

Category: Plant Biology

AI Summary

The study demonstrates that in the marine diatom Chaetoceros gracilis, the peripheral light‑harvesting complex protein Lhcf2 is essential for energy‑dependent nonphotochemical quenching (qE) by enabling stable accumulation and complex formation of the canonical NPQ effector Lhcx1. Knockout of Lhcf2 eliminates qE without affecting the proton gradient or diatoxanthin levels, revealing a cooperative assembly mechanism between distinct light‑harvesting complexes.

nonphotochemical quenching Lhcf2 Lhcx1 Chaetoceros gracilis qE
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